Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1798 ATGTATCGAGTAGCTTCCAAACTAGCTTCCTCCATTAGCTCCTCCTCTTCCAAGAAACTTGTATATAATCGGATAATATCCAACAGAAATTATGTGGCGAAGGATATCAACTTCGGAATTGGAGCTCGTGCTGCTATGCTTCAAGGAGTTTCTGAGGTTGCAGCAGCTGTAAAAGTAACAATGGGACCTAAGGGTCGCAATGTAATCATTGAGAAAAGTCATGGAAAACTCAAGATTACAAAGGATGGAGTGACCGTTGCCAGAAGTGTTAAATTTGAAGACAAGGCCAAAAATCTTGGTGCTGATCTTGTGAAGCAGGTGGCTAAGGCTACCAATACTGCTGCTGGCGATGGTACAACTTGTGCAACCGTTCTTACTCAGGCTATACTCATAGAAGGTTGCAAAGCTATTGCTTCTGGTGTAAATGTTATGGATTTGAGAAACGGTATAAATAAGGCTGTTGATGCTGTAATTACTGATTTGAAAAGCAGAGCATTAATGATTAGCACACAAGAAGAGATAACCCAGGTTGGAACTATATCTGCTAATGGAGAGCGTGATATTGGAGAACTTATTGCAAGAGCAATGGAGAAAGTTGGAAAGGAGGGAGTCATTACTGTTGCTGATGGGAACACTTTGCATAATGAGCTGGAAGTGGTAGAAGGAATGAAACTGACCAGAGGCTATATATCTCCTTATTTTATTACTGATCATATGACCCAGAAATGTGAATTGGAGCACCCCCTTATACTAATCCATGAGAAGAAAATATCAGACATGAGGTCACTAGTGAAAGCATTGGAGCTAGCAGTGGAGAAACATAGGCCACTTCTTGTTGTTGCGGAGGATGTTGAGAGTGATGCTTTGGCTATGCTCATACTCAACAAACATCGTGCTGGGCTTAAGGTTTGTGCTGTAAAAGCTCCAGGTTTTGGTGAAAATAGAAAAGCTGGTTTAGATGATCTAGCCGTTCTTACAGGAGGAGAGGTCATCACAGAAGAACGAGGTTTGACCCTTGATAAAGTCCGGCCAGAAATGCTTGGTTCTGCCAGAAAGGTTACTGTTTCTCTTGATGATACTATTATTCTACATGGTGGTGGGGATAAGAAGCTCATTGAAGGTAGATGTGAGCAGCTCAGGGAAGCAATTGAAGAGAGCACTGCCACATTTGATAAAGAGAAAGCACAGGAACGACTGTCAAAGCTGTCTGGTGGCGTAGCTATTTTCAAGGTTGGAGGGACTAGCGAAGCAGAAGTTGGGGAAAGGAAAGATAGGGTGACCGATGCTGTAAATGCTACAAGAGCAGCCGTGGATGAGGGAATTGTGTCAGGTGGTGGAGTTGCTCTGTTATATGCTAGTAAAATATTGGACAACCTCCAAACCCAGAATGAGGATGAGAAAAGAGGAGTAGAGATAATTAAGAACGCACTTAAGGCACCTGCATTCACAATAGCTGCTAATGCTGGTTTTGATGGTTCTTTAGTTACTGGGAAATTGTTGGAACAAGACGACGATAAGTTTGGTTTTGATGCCGCCAAAGGTGCTTATGTTGACATGGTGAAGTCTGGAATTATAGATCCTCTTAAAGTTGTCAGAACAGCATTGGTTGATGCTGCCAGTGTGTCATTGCTGCTGACTACGACTGAGGCTGCTGTGGTGGATGCTCCGACTAGTAAAGCTCCAAAACGCGTGGCGGATATGGATCAGTTGGACATAACCATGGGCTCCATTTTTTATTCTTTTCCTGCATATTTTGAACTCGTTGCTGCAAAAAAGGGAAAAGCTCGAAACAAAGAAGAAAGAAAGAAAGTCGAGAAGTGGGAAATTGGACCAATGGCTTCGAGTGATGTTGAGGGATCATCTCTTCCTATAGACGATTATGAGACCTTGCTTTCCACTACTGACGTTGAGCTGCTCAAGAGAGCATGGCGTAACGAGAAGGCAGCTCCTGAGATTCTTCGTTTTGAGACCGATTTGATTGGCCGCATTAGGGAACAGATCCAATTAATGGAAGAAACAGTGGAGGAGAAATCAGCTGCTGGCGTTGGTCCCCTTTCAATATCTCTCTATCAGATGGACTTGGATAGAGCCCAGTTTTTACTTAGATCATACCTTCGGATTCGCATTCAGAAGGTGGTACTTACCTATATGGTTAGGGGTTATGTGATTGAAAAGTTTGTGTTCCACATTGCGAAAACTGATGAACTTTGGAACAAGCTATCTAGAGAAGAGAAAATTTTCGCTAGAAGGAAAGGCAAATTTTCCTCTTCCCCCCCCTTCAATTTCATTTCAAATAAACCTTTTGTTTTGTATGTTTCAGTTCCAGAAGCACAACTAGACACATTTGTTGTATGCAGAAGCAAAGAATATCTCACAGGCATCCAGCTTGAGGATGGACCAGTGGATGACAGGTCAATGCTGTTTGAGATGGAGCCTGGTGTCCTGTACTTCATATGTTACAAGTCCATAAAGGCACTTGTGGAGAGTGGACAAATTGATCTTCTCTGA 2508 0.427 MYRVASKLASSISSSSSKKLVYNRIISNRNYVAKDINFGIGARAAMLQGVSEVAAAVKVTMGPKGRNVIIEKSHGKLKITKDGVTVARSVKFEDKAKNLGADLVKQVAKATNTAAGDGTTCATVLTQAILIEGCKAIASGVNVMDLRNGINKAVDAVITDLKSRALMISTQEEITQVGTISANGERDIGELIARAMEKVGKEGVITVADGNTLHNELEVVEGMKLTRGYISPYFITDHMTQKCELEHPLILIHEKKISDMRSLVKALELAVEKHRPLLVVAEDVESDALAMLILNKHRAGLKVCAVKAPGFGENRKAGLDDLAVLTGGEVITEERGLTLDKVRPEMLGSARKVTVSLDDTIILHGGGDKKLIEGRCEQLREAIEESTATFDKEKAQERLSKLSGGVAIFKVGGTSEAEVGERKDRVTDAVNATRAAVDEGIVSGGGVALLYASKILDNLQTQNEDEKRGVEIIKNALKAPAFTIAANAGFDGSLVTGKLLEQDDDKFGFDAAKGAYVDMVKSGIIDPLKVVRTALVDAASVSLLLTTTEAAVVDAPTSKAPKRVADMDQLDITMGSIFYSFPAYFELVAAKKGKARNKEERKKVEKWEIGPMASSDVEGSSLPIDDYETLLSTTDVELLKRAWRNEKAAPEILRFETDLIGRIREQIQLMEETVEEKSAAGVGPLSISLYQMDLDRAQFLLRSYLRIRIQKVVLTYMVRGYVIEKFVFHIAKTDELWNKLSREEKIFARRKGKFSSSPPFNFISNKPFVLYVSVPEAQLDTFVVCRSKEYLTGIQLEDGPVDDRSMLFEMEPGVLYFICYKSIKALVESGQIDLL 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1798 835 PRINTS 60kDa chaperonin signature 298 321 IPR001844 GO:0042026|GO:0140662
Alju05g1798 835 PRINTS 60kDa chaperonin signature 428 449 IPR001844 GO:0042026|GO:0140662
Alju05g1798 835 PRINTS 60kDa chaperonin signature 57 83 IPR001844 GO:0042026|GO:0140662
Alju05g1798 835 PRINTS 60kDa chaperonin signature 113 140 IPR001844 GO:0042026|GO:0140662
Alju05g1798 835 PRINTS 60kDa chaperonin signature 380 405 IPR001844 GO:0042026|GO:0140662
Alju05g1798 835 SUPERFAMILY GINS helical bundle-like 632 753 IPR036224 -
Alju05g1798 835 CDD GINS_A_Sld5 635 750 IPR038749 -
Alju05g1798 835 Gene3D - 778 835 - -
Alju05g1798 835 Gene3D - 36 553 IPR027413 -
Alju05g1798 835 Gene3D - 631 757 - -
Alju05g1798 835 SUPERFAMILY GroEL equatorial domain-like 37 552 IPR027413 -
Alju05g1798 835 Coils Coil 369 396 - -
Alju05g1798 835 SUPERFAMILY GroEL apical domain-like 215 406 IPR027409 -
Alju05g1798 835 NCBIfam chaperonin GroEL 33 556 IPR001844 GO:0042026|GO:0140662
Alju05g1798 835 CDD GINS_B_Sld5 779 835 IPR031633 -
Alju05g1798 835 Pfam DNA replication complex GINS protein SLD5 C-terminus 778 835 IPR031633 -
Alju05g1798 835 ProSitePatterns Chaperonins cpn60 signature. 435 446 IPR018370 GO:0005524|GO:0006457
Alju05g1798 835 Hamap Chaperonin GroEL [groEL]. 32 577 IPR001844 GO:0042026|GO:0140662
Alju05g1798 835 Pfam TCP-1/cpn60 chaperonin family 53 554 IPR002423 GO:0005524
Alju05g1798 835 Coils Coil 456 476 - -
Alju05g1798 835 SUPERFAMILY GroEL-intermediate domain like 168 236 IPR027410 -
Alju05g1798 835 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 30 562 IPR001844 GO:0042026|GO:0140662
Alju05g1798 835 SUPERFAMILY PriA/YqbF domain 779 835 - -
Alju05g1798 835 Gene3D GroEL 222 403 IPR027409 -
Alju05g1798 835 Gene3D - 167 440 IPR027410 -
Alju05g1798 835 FunFam 60 kDa chaperonin 222 403 - -
Alju05g1798 835 CDD GroEL 34 554 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1798 Alju-ChrAlju05 49396336 49405954 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1798 612 750 Core DNA Replication Machinery Family AT5G49010 57.554 1.97e-43 154