Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1758 ATGGAGGGTCTAAGTTGGGGTGCCTCACAAGCTGTGGAGAACCTACCCATATTGTGGAGCAATATAGAAGAACAAGAGCTTGAAGCAACCTTGAATCCAAGCTTTCCTAGTAATCCAATGCAAGAGAAGCAAAAGCAGCCTCAAACAGGTCACAGTCATCATCAACAACAACATCTATATGAAAATTCTGGAAAAGGGTTGATCAAAGAGATGATGGTTCAATTATCAGAAGCAGAAGCAGAATTAGGAGCAGCAGCTACCAGCAGTTCAAAGACAAATCTGTCACAGCTATTAGTAGGTGGGTCCAGCTGGGCAGCTCCTGGTGGTGGATCTTACTGTATGAATAACCCATTTGGTAATTTTGATCCTCCAGAAGAATTCAACATGGCCCACCAACAACAACTTGTTGTCAATAATGTCTCACAAAATGGCACCACCACCTTCTCTGCTGAGTCACTGGATTGCTTGTTCTCAGCTACAAATAGCAACACAGACACATCAGTTGAAGATGATCGAGTAGTCTCCATGATCTTACCAAATTGCAGCAGAAAATCAAACTTATTATGGAGCTTTAGTTATAACAACAATGGAGGAAGTGAATCTGAGAGTACTAATAATAATGCTGATCATGAAACTTTATCTCAGGGTTCATCAGATCTTTATGCAAATCAAGGGATAAAAATTGCAGAATCCACCAATAAGTGTTCAAAAAGGAGACTTGATGATGCTTTTGATCAATATCCCTACTTTAACATTGAAGAAGGTGGTGGTGGTTCAAGTTCATTCAGGCTCATTGAGGAGAAGAACAACAACAACAACAATAATAATCCACCAAATCCCAAAAGACCCAGATGGGATTCTAAGCTTCCAACTTCTTCAAACATCAATTTCAAGCAGCCTCATTCACCATCAACAACAACATCAACTTCCATGGAAGACCCAGACCCAGATGCCATAGCACAGATGAAAGAGATGATATACAGGGCTGCAGCATTTAGGCCTGTGAATTTAGGGATGGAGGTTGTGGAGAAGCCGAAGAGGAAGAATGTGAAGATATCAACAGATCCTCAAACTGTGGCTGCCAGGCTTAGAAGGGAGAGAATAAGTGAAAGAATTAGGGTTTTGCAGAAATTGGTTCCTGGTGGAAGCAAGATGGACACTGCTTCAATGCTTGATGAAGCTGCAAATTACCTTAAGTTTTTAAGGTCACAAGTGAAAGCACTAGAGAGTCTAGGAAACAAAGTTGAGGCTATGAATTGTCCTCCCACTAATATTGCCTTCTCTTTTAACCCTTCTTTTCCCATGCAGTTTAACCCTAATAGCTACAACATCCAACAATGA 1341 0.4094 MEGLSWGASQAVENLPILWSNIEEQELEATLNPSFPSNPMQEKQKQPQTGHSHHQQQHLYENSGKGLIKEMMVQLSEAEAELGAAATSSSKTNLSQLLVGGSSWAAPGGGSYCMNNPFGNFDPPEEFNMAHQQQLVVNNVSQNGTTTFSAESLDCLFSATNSNTDTSVEDDRVVSMILPNCSRKSNLLWSFSYNNNGGSESESTNNNADHETLSQGSSDLYANQGIKIAESTNKCSKRRLDDAFDQYPYFNIEEGGGGSSSFRLIEEKNNNNNNNNPPNPKRPRWDSKLPTSSNINFKQPHSPSTTTSTSMEDPDPDAIAQMKEMIYRAAAFRPVNLGMEVVEKPKRKNVKISTDPQTVAARLRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVEAMNCPPTNIAFSFNPSFPMQFNPNSYNIQQ 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1758 446 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 414 IPR036638 GO:0046983
Alju05g1758 446 MobiDBLite consensus disorder prediction 261 316 - -
Alju05g1758 446 Coils Coil 391 411 - -
Alju05g1758 446 Gene3D - 357 420 IPR036638 GO:0046983
Alju05g1758 446 SMART finulus 358 407 IPR011598 GO:0046983
Alju05g1758 446 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 188 439 IPR045843 GO:0003700|GO:0006355
Alju05g1758 446 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Alju05g1758 446 MobiDBLite consensus disorder prediction 31 58 - -
Alju05g1758 446 MobiDBLite consensus disorder prediction 263 314 - -
Alju05g1758 446 Pfam Helix-loop-helix DNA-binding domain 362 401 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1758 Alju-ChrAlju05 48982684 48984024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1758 132 445 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.866 1.28e-72 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju05g1758 HLH 4.6e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju11g0650 11 7341197 7342228 Alju05g1758 05 48982684 48984024 CCT
Alju05g1758 05 48982684 48984024 Alju05g1758 05 48982684 48984024 ECH