LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju05g1747	ATGGCTCCCAGAAGTAGAAAGGGAATCAAACGGCAGAAAATCTCACCGCCGGAAGCCACCCATCCTGACGGCGCCAATGGAATATTCCGTTTGCCTGATGACATTTTGAAGTGTATCTTATTTTACTTGCCATTTGAAGATTTACTATCGTTATCCGCTGTTTCAAAGACTTGGCAAAGAATCTGCAATTCCCTTCCAATCTACAAATTTAACTTCGATCTTGAAGAAGAAGAAGATGGCACTACGATCGAGGACTTTGTCACTTCAATCAACAAAGCCATCTCAGCCCTAAGAAATCACAGAGCCATAATTGAGAGATTTTGTCTCAACATGAATCTATCGGAAGAAGAAGGTTTGAAGTTGAAATCTGACCTAGATTATTGGCTTTCTTTAATCTTAAAAAATCATGTGAAGGAGATTGATTTAGGGTTTTCTAATAATTCACACAATATTTACTTCACTTTACCCCAATCAATTTTCACTTCCAAATCTCTAGTCAAACTTCACCTAAAAGGTTGCAAGTTTCCGGCCAACATCTCACTCACCGGCGAAGACAGAAAATCCAGGTTTAATAAATTCAATTGTCTCAAAGAGATATCTCTTGTGAAAATTATTGCCGGTGATGATCAAATCCAGGAGCTTATAAATCTTGCCAGAAACTTCCTTGAGAATCTCTTGATCAAAACATCTTCAGTGAATCTTCTGAGTCTTGAATCCTTCTCAAAGCTTGAATTTCTTGAAGTTAAAGTTAAGAAATTGTACATAAATCAAGCTATGAAGCTAGATAATGTGGTTGTCTATGGGCTTAAGAGAGCATATTTTTATGGGGTTGATAATATAAGAACAATAAGGTGTGTGAAATGGCACCAAAGTGCCTTAAGATCAATTCAAGAACTTGTGGCCAGCCTTCCATTTTTGGAAACATTACAATTGTTCATGCTACGTAATCAAAGGATTAGGATTGAAAGTGAAAATCTTAAGATGTTGTTATTGTATGAATATCAAAGGTTTGAGGAACCTTTGGCAGTTGATGTGGTCGCTCCTGAACTTAGGGTGATTAAGTTCAATGGTTTTTGTGTTCCTTTTATTACTGTGTTTGGAGAGAATCAGAAACTTCGGTGTCGTCATTTAGGTCATCCCCATGGTGGTGTCCATGGCTCTCACCTTCACTTGCTTGGCAAGTTTTCTCAGAACTTGATGCAATCTATGGCGATAATTCACTTGCATGACATTTTGATGGTTGATGAGAATGGAGAGAATGTGGTGAAGAGTCTGGAAGAGTTGAGAGAAGAACCAGAAGTTCATCGTCCCTCAACAGTGAAGATGTTGGTACTTGAATGCATTCCTGCTGCTTCAGACTACAAATCATTTCTAAATGCCTTGTTTTGGACTTGTCATCCAAGGACTCTCGCCCTTATGCTCACTTCTAAACATACCATCAAATCACCTCACAGGCCTCCTTTCATTAGCTACCTAATAAATGAGTTAGTGAGAAGAAGAGTAAAGAACCCGGGATGCTGTTGGGAAGCAAATAAGCCAAAATGCTGGAGGCACTACGTTGCACAAGTGAAGTTTAATGTGTACAGATACAGCATGCTGAAGCAGTTTGGTCAACATGATGATAATAATAAGGAACTACTAGACCTCCTATCTGATGATGATTACCACCATCATATGCCACAAAATGGTGATGACGATGATACCTCAAACAAAGATGACGAAGAAGAAGAAGATGAAGATGAAAAAGGAGAAGAAAAAGAACTTGTTGTCTGGAAGGCAAGTGGATCACGCGAACCCGCAATGGCGACCCCTCCGATGGGGCTGCCGGTAAACCCATTGTTCGACGGGGCTGCGCCGCCGCCCCCACAAACTCCGTGGACAGACATGACCGGAATATGCTTCCGTGACCAGCTCTGGCTTAACACTTACCCTCTCGATCGCAACCTAGTGTTTGATTATTTCGCCTTATCCCCCTTCTACGACTGGACCTGCAACAATGAACAGCTTCGCATGCGCTCAATTCACCCTCTTGATCCATCTCAATTATCGAAAATGACAGGCATAGAGTATATGCTCAGTGAAGTCATGGAACCGCACCTTTTTGTTATTCGCAAGCAAAAGAGAGATGGCCCTGAGAAAGTTACACCGATGCTAGCTTATTACATCTTGGATGGTTCGATATACCAAGCACCACAGCTATGCAATGTTTTTGCTGCTCGAATTGGAAGGGCACTTTATCACATACAGAAGGCTTTCAGTACAGCTGCATCAAAGCTGGAGAAGATAGGATATGTTGATTCTGAAAATGAGCCTGCAGTGCCAGAAGCGAAGGCTGGTAAAGAGACAATTGACATAAAGGAAATGATGCGGGTGGATCACATTCTTGCATCCCTTCAGCGTAAGCTACCTCCTGCTCCACCTCCACCACCATTTCCTGAAGGCTACATGCCACCTCCAACTGCAGAAACTGAGAAAGGACCCGAAGGTCAAGAAGCAGGGGAGTCGCAAGCTCCTCATATTGATCCTATAATTGATCAAGGACCTGCAAAGAGGATGAAAGTTTGA	2565	0.4175	MAPRSRKGIKRQKISPPEATHPDGANGIFRLPDDILKCILFYLPFEDLLSLSAVSKTWQRICNSLPIYKFNFDLEEEEDGTTIEDFVTSINKAISALRNHRAIIERFCLNMNLSEEEGLKLKSDLDYWLSLILKNHVKEIDLGFSNNSHNIYFTLPQSIFTSKSLVKLHLKGCKFPANISLTGEDRKSRFNKFNCLKEISLVKIIAGDDQIQELINLARNFLENLLIKTSSVNLLSLESFSKLEFLEVKVKKLYINQAMKLDNVVVYGLKRAYFYGVDNIRTIRCVKWHQSALRSIQELVASLPFLETLQLFMLRNQRIRIESENLKMLLLYEYQRFEEPLAVDVVAPELRVIKFNGFCVPFITVFGENQKLRCRHLGHPHGGVHGSHLHLLGKFSQNLMQSMAIIHLHDILMVDENGENVVKSLEELREEPEVHRPSTVKMLVLECIPAASDYKSFLNALFWTCHPRTLALMLTSKHTIKSPHRPPFISYLINELVRRRVKNPGCCWEANKPKCWRHYVAQVKFNVYRYSMLKQFGQHDDNNKELLDLLSDDDYHHHMPQNGDDDDTSNKDDEEEEDEDEKGEEKELVVWKASGSREPAMATPPMGLPVNPLFDGAAPPPPQTPWTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDPSQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLAYYILDGSIYQAPQLCNVFAARIGRALYHIQKAFSTAASKLEKIGYVDSENEPAVPEAKAGKETIDIKEMMRVDHILASLQRKLPPAPPPPPFPEGYMPPPTAETEKGPEGQEAGESQAPHIDPIIDQGPAKRMKV	854

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju05g1747	854	Pfam	F-box domain	28	68	IPR001810	GO:0005515
	Alju05g1747	854	MobiDBLite	consensus disorder prediction	801	817	-	-
	Alju05g1747	854	MobiDBLite	consensus disorder prediction	554	589	-	-
	Alju05g1747	854	MobiDBLite	consensus disorder prediction	1	22	-	-
	Alju05g1747	854	PANTHER	MED-6-RELATED	617	853	IPR007018	GO:0003712\|GO:0006357\|GO:0016592
	Alju05g1747	854	SUPERFAMILY	F-box domain	26	75	IPR036047	GO:0005515
	Alju05g1747	854	ProSiteProfiles	F-box domain profile.	25	71	IPR001810	GO:0005515
	Alju05g1747	854	Gene3D	-	27	68	-	-
	Alju05g1747	854	Gene3D	Mediator complex, subunit Med6	626	755	IPR038566	-
	Alju05g1747	854	MobiDBLite	consensus disorder prediction	567	584	-	-
	Alju05g1747	854	MobiDBLite	consensus disorder prediction	800	854	-	-
	Alju05g1747	854	Pfam	MED6 mediator sub complex component	632	757	IPR007018	GO:0003712\|GO:0006357\|GO:0016592
	Alju05g1747	854	CDD	F-box_SF	30	63	-	-
	Alju05g1747	854	FunFam	Mediator of RNA polymerase II transcription subunit 6	626	755	-	-
	Alju05g1747	854	SMART	fbox_2	31	71	IPR001810	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju05g1747	Alju-ChrAlju05	48851560	48860405	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	MED6	Alju05g1747		Med6	6.7e-42	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Alju05g1747	05	48851560	48860405	Alju05g1747	05	48851560	48860405	ECH