Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1708 ATGGAAGTGCCTGAATACTTTGTCGGTGCCTACTTCGGCTCCGGAGGGGACCATTTCTTTCCGGAAAAGCGCCATTCCGACCAGAAGCCCGCCACCGAGCCTTTTGCCGTCGACGACCTCCTCGATTTCTCCCATGCCGACGCTATCATGTCCGATGCTGCTTTCATCAATAATGTCGCCGGAAACTCCACCGACTCCTCCACCGGCACTGCTGTTGATAGCTGCAACTCCTCAATTTCCCGTGTCGATAGTAACCGTTTCTCAACCAACTTTGCTCCTCGTCCCTTCGGTGATCATCCGTTATCCGGCGAACTCTGTGTGCCGTATGATGACATGGCGGAACTGGAATGGCTATCGAATTTCGTGGAAGACTCGTTCACCGCACAAGACGAGCTGAAAACACTCCACCTTCTATCCGGAGCCACCACCGCTTCCGCATTTGGCGCCAAACCTCAGACTCCAGAATCTTCCTCCTCTTCTGAAACCCTCCCGCCTTTCGCTCCCGATGCAGCTCGCAACGCACCCTTTTTCCAGCCGGAAACTCCATTACCAGGCAAAGCTCGGAGCAAGCGTTCCCGCTCTGCTCCTGGCGATTGGTCAACGCGCTTCCTCCATCTCGTAACACCACCACCGCTCAACCACTCGACCACGACGGAGGCCAAACCAGTTCACGCTAAGGCGACGACAGTGAAGAAGAGGGAGAGCTCAAATTCCGATTCCTCAGGTCGGAAATGTCTGCACTGTGCCGCCGAGAAGACGCCGCAATGGCGCACTGGCCCGATGGGTCCGAAGACTCTGTGCAATGCTTGTGGAGTCCGGTACAAGTCCGGGAGGCTGGTGCCGGAGTACCGACCGGCGGCGAGCCCGACGTTTGTGTCGACAAAGCACTCGAATTCTCATAGGAAGGTCTTGGAGCTGAGGAGGCAGACGGATCTGCAAAGGCAGCAGCAGCAGCAGCAACTGATTAGTCAAGCTTCCATTTTCGGCGTATCCAACGGCGGAGATGAGTTCTTGATCCATCACCATGGTGGGCCCGACTATAGGCATATCATGTAG 1056 0.5597 MEVPEYFVGAYFGSGGDHFFPEKRHSDQKPATEPFAVDDLLDFSHADAIMSDAAFINNVAGNSTDSSTGTAVDSCNSSISRVDSNRFSTNFAPRPFGDHPLSGELCVPYDDMAELEWLSNFVEDSFTAQDELKTLHLLSGATTASAFGAKPQTPESSSSSETLPPFAPDAARNAPFFQPETPLPGKARSKRSRSAPGDWSTRFLHLVTPPPLNHSTTTEAKPVHAKATTVKKRESSNSDSSGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQTDLQRQQQQQQLISQASIFGVSNGGDEFLIHHHGGPDYRHIM 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1708 351 SMART GATA_3 239 289 IPR000679 GO:0006355|GO:0043565
Alju05g1708 351 CDD ZnF_GATA 244 291 IPR000679 GO:0006355|GO:0043565
Alju05g1708 351 FunFam GATA transcription factor 234 320 - -
Alju05g1708 351 ProSiteProfiles GATA-type zinc finger domain profile. 239 275 IPR000679 GO:0006355|GO:0043565
Alju05g1708 351 Pfam GATA zinc finger 245 278 IPR000679 GO:0006355|GO:0043565
Alju05g1708 351 PIRSF Txn_fac_GATA_plant 21 333 IPR016679 GO:0003677|GO:0005634|GO:0045893
Alju05g1708 351 PANTHER GATA TRANSCRIPTION FACTOR 29 319 - -
Alju05g1708 351 MobiDBLite consensus disorder prediction 225 240 - -
Alju05g1708 351 Gene3D - 239 289 IPR013088 GO:0006355|GO:0008270
Alju05g1708 351 ProSitePatterns GATA-type zinc finger domain. 245 270 IPR000679 GO:0006355|GO:0043565
Alju05g1708 351 MobiDBLite consensus disorder prediction 146 243 - -
Alju05g1708 351 MobiDBLite consensus disorder prediction 146 164 - -
Alju05g1708 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 240 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1708 Alju-ChrAlju05 48288715 48289988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1708 33 351 C2C2-Gata Transcription Factor Family AT4G32890 43.976 3.68e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju05g1708 GATA 2.1e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju05g1708 05 48288715 48289988 Alju05g1708 05 48288715 48289988 ECH