Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1689 ATGTCTAAACCATTAGAACATGATTACATAGGCTTAGCGGCAACATCAGAGAATCCTTCCATGGAAAAACACACTGAGAAAATATCTTCTCCTTCTTCTGCTGCTTCGTCTACTCTTTCTTCTGAGAAAGAAGATAGCTCTTCTCTTAATTTCAAAGAGACAGAGCTCAGGCTTGGACTTCCTGGCACTGATTCTCCTCCTCCTCCTCCTCCTTCTGAGAGGAAATCTGGAAGTGGGATTTCTCTTTTCGGCAAGGATTTGCAGAGTAACCACAATAATACTGATACTAATGCTAATAATGGGTTCTCTTCTTCTTCCCTTTTGAAGAACAACAACGTGGCTGGAGCTAAGAGGGTTTTTTCTGATGCCATTGATGGGATTGGGGCTTCTGTGAAATGGGGTTTCTGTGTTAGCGACAAGAAAATTGGGTCTGAAGCTGATTTGGGAAAAGGAGCTTCTTTTGTGAAGCCTCCTCTTGTTGCTGCTGAAGCTTCTGCTAATTATGAACAAAAGAGCATTCAAGATGGTGGAACAGTTCAAGAGAAGAAGAAAGCTCAGGTTTCTTCAGTTGCTGCTACTAATGAACATGGAAGTGCTCCTCCTGCTGCTAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCTTTTCGAAAGAACAGCATGGCCTCTAATTCGATGAAGAACAATGATGAAGGTGAAGGTGGTAAAGCAGGATATGGCTGTCTCTATGTGAAAGTCAGCATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTCAAAACCTTCAGCAACTATGTAGATCTTTCTTCTGCTCTTGAGAAAATGTTCAGCTGCTTTACCATTGGTCAATGCAGTTCTGGAGGACTTGCTGTGAAAGATGGCCTAAGTGAGAGCTCTCTGAGGGATATTCTCCATGGTTCTGAATATGTTCTTACTTATGAAGATAAAGATGGAGATTGGATGCTTGTTGGTGATGTTCCCTGGGAGATGTTCACCGACTCATGTAAGAGATTAAGGATCATGAAAGGTTCTGAGGCGATTGGGCTCGCTCCAAGGGTGGTGGAAAAATCCAGGAGCCAAAACTAA 1086 0.4337 MSKPLEHDYIGLAATSENPSMEKHTEKISSPSSAASSTLSSEKEDSSSLNFKETELRLGLPGTDSPPPPPPSERKSGSGISLFGKDLQSNHNNTDTNANNGFSSSSLLKNNNVAGAKRVFSDAIDGIGASVKWGFCVSDKKIGSEADLGKGASFVKPPLVAAEASANYEQKSIQDGGTVQEKKKAQVSSVAATNEHGSAPPAAKAQVVGWPPIRSFRKNSMASNSMKNNDEGEGGKAGYGCLYVKVSMDGAPYLRKVDLKTFSNYVDLSSALEKMFSCFTIGQCSSGGLAVKDGLSESSLRDILHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKGSEAIGLAPRVVEKSRSQN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1689 361 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 48 348 IPR003311 GO:0005634|GO:0006355
Alju05g1689 361 Pfam AUX/IAA family 53 352 IPR033389 -
Alju05g1689 361 SUPERFAMILY CAD & PB1 domains 241 342 - -
Alju05g1689 361 ProSiteProfiles PB1 domain profile. 241 343 IPR000270 GO:0005515
Alju05g1689 361 MobiDBLite consensus disorder prediction 1 102 - -
Alju05g1689 361 MobiDBLite consensus disorder prediction 25 45 - -
Alju05g1689 361 Gene3D - 236 355 - -
Alju05g1689 361 MobiDBLite consensus disorder prediction 82 102 - -
Alju05g1689 361 FunFam Auxin-responsive protein 236 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1689 Alju-ChrAlju05 48083786 48086358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1689 244 346 B3 DNA Binding Superfamily AT2G46530 33.010 7.28e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Alju05g1689 AUX_IAA 2e-90 CL0072