Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1670 ATGGGCGTGGACATGTCCAATAACCCACCTCCATCTTCTCACACTAAAGACTTCTTTGCTTCTCCGGCTCTTTCTCTCAGTCTCGCTGGGATTTTCCGGCATGCCGGAGAAGCCGCTGTAGCGGCGGGGGCCGCCACGTCCAGCCGGGAGGTGGAGGAGGGGGATGAAGGGAGTGGCGGCGGCGGCCGGCGGGATGAAACAGTGGAGATTAGCAGCGAGAACTCCGGCCACACGAGATCCAGATCGGACGATATTGATTTTGAAGGAGAAGGCGACGGCGACGACGGAGACGACGGTGACGGAGATAAGAACAAGAAGAAGAAGAGGAAGAAGTATCACAGGCACACTGCTGAACAAATCAGAGAAATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAAAGGCAACAACTTAGCAAGCAATTAGGGCTTGCTCCTAGACAAGTCAAGTTCTGGTTCCAAAATCGTCGCACCCAAATCAAGGCAATACAAGAACGTCATGAGAACTCATTGTTAAAGACAGAAATAGAGAAACTGAGAGACGAAAACAAGCAAATGAGAGAGACCATCAACAAATCTTGCTGCCCCAACTGTGGCATGACCACCACAAGCAGAGACACCGTTATGTGCACCGAAGAACAACAACTTCGTATCGAAAATGCCAAACTCAAAGCCGAGGTAGAGAAGTTAAGAGCTGTAATCGGGAAGTACCCGCAAGGAACGGCGTCACCGTCGTGTTCCGGCGGAGGAAACGAGCAAGAGAACCGAAGCTCGTTGGATTTTTACACAGGAATATTTGGGCTTGACAAGACAAGAATAATGGAGATAGTGAACCAAGCTTTGGAGGAGCTGGTGAAAATGGCGACGGTGGGAGAACCATTGTGGGTTCGGAGTTTAGAAACTGATCGTGAGATACTTAACTACGATGAGTATGTGAAGGAGTTCGGAGCCAGCAAGGTTGAAAGTTCTTCTTCAAGCAGCAGCCATGGAGGTAGGATCAAGAGATCCATCGAAGCTTCCAGAGACACTGGTCTTGTTTTTGTTGATCTTCCTCGCCTTCTTCACGGATTCTTGGATGTGAATCAATGGAAGGAGATGTTTCCATGCTTGATATCAAAGGCAGCAACTGTAGATGTCATTTGCAGTGGAGACGGAGCTAACAGGGATGGTGCAGTTCATTTGATGTTTGCTGAGCTACAAATGCTAACGCCAATGGTGGCCACAAGGGAAGTGTATTTCGTGAGGTACTGCAAGCAACTCAGTGCAGAGCAGTGGGCAATCGTGGACGTGTCAGTGGACAAGGTTGAAGACAACATCGATGCCTCCATTGTCAAATGTCGAAAACGCCCCTCTGGCTGCATTATTGAAGACAAGTCTAATGGCCATTGCAAGGTGACGTGGGTGGAGCACTTGGAATGCCAGAAGAGCCCAGTGCACACAATGTACCGCAATATTGTAAACAGGGGCCTGGCTTTTGGTGCAAGGCACTGGATTGCCACTCTCCAACTTCAATGTGAACGTCTGGTTTTCTTCATGGCCACCAATGTTCCCATGAAAGATTCAACTGGTGTTGCAACTTTAGCAGGAAGGAAGAGCATTTTGAAGCTGGCGCAGAGAATGACGTGCAACTTCTGCCATGCCGTTGGAGCTTCGAGCTTCCATACATGGACTAAGGTCACCAGCAAAACAGGGGAAGATGTCAGAATAAGTTCTAGGAAGAATTTAAATGATCCTGGGGAACCTCTAGGGGTGATCTTGTGTGCAGTTTCTTCTGTATGGCTGCCGGTTTCTCCTAATGGTCTGTTCGATTTCTTTAGAGATGAAGCTCGCAGATCTGAGTGGGACATCATGTCCAATGGTTCTTCAGTGCAATCCATAGCAAACTTAGCGAAAGGACAAGATCGGGGCAATTCAGTGACCATCCAAACAATTAAATCAAAAGAGAACAGCATGTGGGTATTACAAGATAGCTGCACAAATGCATATGAATCAATGGTGGTGTATGCACCAGTTGACATCAGTGGGATTCAGTCAGTGATGACAGGATGTGACTCTAGCAATCTAGCCATACTTCCCTCAGGCTTCTCAATTCTACCTGATGGGGTGGATGCGAGGCCACTGGTCATAACTTCAAGGGAGGAAGAAAGAAACACAGAAGGAGGGTCTTTGCTCACAGTGGCTTTCCAAGTCCTTACTAATGCATCTCCTACAGCTAAGCTAACAATGGAGTCTGTGGAATCTGTCAACACTCTTATATCTTGTACATTAAGAAATATCAGAACCAGTTTACAATGTGAGGAAGGTTGA 2316 0.4767 MGVDMSNNPPPSSHTKDFFASPALSLSLAGIFRHAGEAAVAAGAATSSREVEEGDEGSGGGGRRDETVEISSENSGHTRSRSDDIDFEGEGDGDDGDDGDGDKNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTEIEKLRDENKQMRETINKSCCPNCGMTTTSRDTVMCTEEQQLRIENAKLKAEVEKLRAVIGKYPQGTASPSCSGGGNEQENRSSLDFYTGIFGLDKTRIMEIVNQALEELVKMATVGEPLWVRSLETDREILNYDEYVKEFGASKVESSSSSSSHGGRIKRSIEASRDTGLVFVDLPRLLHGFLDVNQWKEMFPCLISKAATVDVICSGDGANRDGAVHLMFAELQMLTPMVATREVYFVRYCKQLSAEQWAIVDVSVDKVEDNIDASIVKCRKRPSGCIIEDKSNGHCKVTWVEHLECQKSPVHTMYRNIVNRGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTCNFCHAVGASSFHTWTKVTSKTGEDVRISSRKNLNDPGEPLGVILCAVSSVWLPVSPNGLFDFFRDEARRSEWDIMSNGSSVQSIANLAKGQDRGNSVTIQTIKSKENSMWVLQDSCTNAYESMVVYAPVDISGIQSVMTGCDSSNLAILPSGFSILPDGVDARPLVITSREEERNTEGGSLLTVAFQVLTNASPTAKLTMESVESVNTLISCTLRNIRTSLQCEEG 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1670 771 Gene3D - 322 507 IPR023393 -
Alju05g1670 771 SMART HOX_1 108 170 IPR001356 GO:0003677
Alju05g1670 771 Pfam START domain 279 510 IPR002913 GO:0008289
Alju05g1670 771 SMART START_1 278 510 IPR002913 GO:0008289
Alju05g1670 771 FunFam Homeobox-leucine zipper protein GLABRA 2 278 509 - -
Alju05g1670 771 SUPERFAMILY Bet v1-like 271 510 - -
Alju05g1670 771 MobiDBLite consensus disorder prediction 38 118 - -
Alju05g1670 771 SUPERFAMILY Homeodomain-like 97 167 IPR009057 -
Alju05g1670 771 MobiDBLite consensus disorder prediction 49 86 - -
Alju05g1670 771 FunFam Homeobox-leucine zipper protein HDG1 95 182 - -
Alju05g1670 771 Coils Coil 216 236 - -
Alju05g1670 771 Pfam Homeodomain 109 164 IPR001356 GO:0003677
Alju05g1670 771 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Alju05g1670 771 ProSiteProfiles START domain profile. 269 513 IPR002913 GO:0008289
Alju05g1670 771 Coils Coil 165 195 - -
Alju05g1670 771 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
Alju05g1670 771 CDD homeodomain 113 164 IPR001356 GO:0003677
Alju05g1670 771 CDD START_ArGLABRA2_like 273 509 - -
Alju05g1670 771 Gene3D - 97 179 - -
Alju05g1670 771 SUPERFAMILY Bet v1-like 540 757 - -
Alju05g1670 771 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 105 766 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1670 Alju-ChrAlju05 47893931 47902439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1670 70 770 Homeobox Transcription Factor Family AT1G79840 65.315 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju05g1670 START 2.7e-55 CL0209