Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju05g1661 | ATGGCGTCTCGCCGGCGAATGCTGTTGAAGGTCATAATCCTAGGAGATAGCGGGGTTGGTAAAACGTCATTGATGAACCAATATGTGAACCGTAAGTTCAGTAATCAATATAAGGCTACCATCGGTGCTGATTTTCTGACCAAGGAAGTTCAATTTGAAGATAGGCTGTTCACATTGCAGATTTGGGATACTGCTGGTCAAGAGAGGTTTCAGAGCCTTGGTGTTGCTTTCTACCGTGGTGCAGACTGTTGTGTCCTTGTTTATGATGTAAATGTCATGAAGTCTTTTGAAAATCTCAACCACTGGCGTGAAGAATTTCTTATTCAGGCTAGTCCATCTGACCCAGAAAACTTCCCATTTGTTGTCTTGGGAAACAAAATAGATGTTGATGGTGGGAATAGCCGAGTTGTTTCTGAGAAGAAAGCAAAGGCATGGTGTGCTTCCAAGGGAAACATTCCATACTTTGAGACCTCTGCAAAAGAAGGATTTAATGTAGAGGCTGCTTTTCAGTGTATAGCTAAAGATGCTCTCAAGAATGAACCTGAAGAAGAAGTATACCTGCCTGATACAATTGATGTTGGTGGTGGTGGACGACAGCAAAGGTCTACAGACAACCTCATGATGGACAACCCTCCCCAGACTTACTTGGCCGACCTTCATGAACAAAGTACCGGAACCCGGATTCAAGTTCGGGTTGATCGATTCTTCAGCAGAGAAAACATCGGACTGCCTGTGCTGTCCATGTCCCGACCTACGAAGGAAGTTGTTTCCATTGACTATGGCACTCGGATGCTTGCATCTATCTACTCTGAGGAGATCAGAGACCGATTCTTCCACAGGCTGCGCAGAGGCTGCCCAACTGTGAGCTCAATGAGTGATGCTACAACCTATGAGTTTGATCCCCAGATCCCCGAAGTGCAGTCTCTGAAGTAG | 933 | 0.4555 | MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNHWREEFLIQASPSDPENFPFVVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKDALKNEPEEEVYLPDTIDVGGGGRQQRSTDNLMMDNPPQTYLADLHEQSTGTRIQVRVDRFFSRENIGLPVLSMSRPTKEVVSIDYGTRMLASIYSEEIRDRFFHRLRRGCPTVSSMSDATTYEFDPQIPEVQSLK | 310 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju05g1661 | 310 | SMART | ran_sub_2 | 14 | 219 | - | - | |
| Alju05g1661 | 310 | CDD | Rab7 | 9 | 182 | - | - | |
| Alju05g1661 | 310 | ProSiteProfiles | small GTPase Rho family profile. | 2 | 176 | - | - | |
| Alju05g1661 | 310 | SMART | rho_sub_3 | 11 | 179 | IPR001806 | GO:0003924|GO:0005525 | |
| Alju05g1661 | 310 | NCBIfam | small GTP-binding protein domain | 10 | 172 | IPR005225 | GO:0005525 | |
| Alju05g1661 | 310 | MobiDBLite | consensus disorder prediction | 188 | 207 | - | - | |
| Alju05g1661 | 310 | SMART | ras_sub_4 | 6 | 179 | - | - | |
| Alju05g1661 | 310 | SMART | rab_sub_5 | 9 | 179 | - | - | |
| Alju05g1661 | 310 | ProSiteProfiles | small GTPase Ras family profile. | 3 | 207 | IPR001806 | GO:0003924|GO:0005525 | |
| Alju05g1661 | 310 | ProSiteProfiles | small GTPase Rab1 family profile. | 4 | 237 | - | - | |
| Alju05g1661 | 310 | PANTHER | RAB FAMILY | 1 | 193 | - | - | |
| Alju05g1661 | 310 | Pfam | Ras family | 10 | 177 | IPR001806 | GO:0003924|GO:0005525 | |
| Alju05g1661 | 310 | FunFam | Ras-related protein Rab7 | 1 | 189 | - | - | |
| Alju05g1661 | 310 | PRINTS | Transforming protein P21 ras signature | 116 | 129 | - | - | |
| Alju05g1661 | 310 | PRINTS | Transforming protein P21 ras signature | 9 | 30 | - | - | |
| Alju05g1661 | 310 | PRINTS | Transforming protein P21 ras signature | 154 | 176 | - | - | |
| Alju05g1661 | 310 | PRINTS | Transforming protein P21 ras signature | 32 | 48 | - | - | |
| Alju05g1661 | 310 | PRINTS | Transforming protein P21 ras signature | 50 | 72 | - | - | |
| Alju05g1661 | 310 | Gene3D | - | 1 | 189 | IPR027417 | - | |
| Alju05g1661 | 310 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 5 | 184 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju05g1661 | Alju-ChrAlju05 | 47838524 | 47843914 | Dispersed/Transposed |