LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju05g1650	ATGTATTCTTGTAAATTGGGATCCCTTGCTCTCCTTCTTGCACTCTCTGCTTCGCATCACTTCATTCTCCTTCACTGTGAAGAGCCTGACACTGAGCCGGAGGAGCCGGAGGAGCCGGAGGAGCAGGCTCCGATCGGACTAATTGCAGGGGCTGTGATTGGTTCGGTAGTGCTCATAGTGGGTTTATTTGCATGTTTCTTTATATGGAGAAAGAGAAGGACAAGACAATCTGCGCAACCACCCCATGCCTATGAGGAGCTTGCTCCATCAACTCCTTCCGTCGGCTTGAGACTAGGACCAACAACATTTACATATGAAGAATTAGAATCGGCAACAAATGGATTCTCAGACTCAAATTTTCTAGGCGAAGGTGGTTATGGAGTTGTCCATAAAGGAGTTCACCCTTATGATAAACAAACTTATGTTGCCATTAAGCAGCTAAAATATGGAATCCAACAGGCTCACAGAGAGTTCCTTAATGAAATCGCCATCATTAATCGTGTCCATCACAAATATCTTGTTTCCCTTGTTGGATATTGCATCGATGAAGCTCGCAGCAAGATGATGCTTGTTTATGAGTTAGTATCAAATAGTACCTTAGCCTTCCACCTCCATGGCACAGAAACCATAGACTGGAAAACAAGGATGAAGATTGCTATTGGCTCTGCAAAGGGATTGGCATATCTGCATGAAGAATGTCATCCGAAAATCATACACCGTGACATCAAAGCATCAAATATTCTTCTCGATGATAATTTTGAGCCGAAGGTTGCAGATTTTGGACTGGCCAAATTTTCATTCGAGTCCCAGGTCATGACTCGGATAATGGGAACTTTTGGATATTTAGCACCAGAATATGCAGCTAGCGGTAACCTCACAGAGAAGGCAGATGTGTTCGCCTTTGGTGTTGTGCTCTTGGAGTTGATAACTGGACGAAAACCTGTTGGCGATAAGACTTTTCCAAATGGCAGTATGGCAAGACACTTATTCTCGGAAGCTTTGGATAACAGACACTTTGAAGGTATTGCTGATGAAAGGTTGGAGAATGATTACGACGTTGAAGAGATGTTTCGAATGATTTCTTGTGCTGCAAATTGCGTCCGCCATTCAGCAACCAATCGTCCTCAAATGACCCAGGTAGTTCAAGCTCTAGAAGGAGCGATTTGGCTGGAGAATGATATGACGGGAGAGAGCCAGGCGAGGCGGCAACTCAGCGAAGACATGAACAAGATGAGGAAGATGGCATTGGGATCATATAGCACCACTCACTCTGATCAACTTCACTACTCCACCTCTACTTCTAGTTGTAGCTCCAAAATATTCAGATAG	1329	0.4424	MYSCKLGSLALLLALSASHHFILLHCEEPDTEPEEPEEPEEQAPIGLIAGAVIGSVVLIVGLFACFFIWRKRRTRQSAQPPHAYEELAPSTPSVGLRLGPTTFTYEELESATNGFSDSNFLGEGGYGVVHKGVHPYDKQTYVAIKQLKYGIQQAHREFLNEIAIINRVHHKYLVSLVGYCIDEARSKMMLVYELVSNSTLAFHLHGTETIDWKTRMKIAIGSAKGLAYLHEECHPKIIHRDIKASNILLDDNFEPKVADFGLAKFSFESQVMTRIMGTFGYLAPEYAASGNLTEKADVFAFGVVLLELITGRKPVGDKTFPNGSMARHLFSEALDNRHFEGIADERLENDYDVEEMFRMISCAANCVRHSATNRPQMTQVVQALEGAIWLENDMTGESQARRQLSEDMNKMRKMALGSYSTTHSDQLHYSTSTSSCSSKIFR	442

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju05g1650	442	Gene3D	Transferase(Phosphotransferase) domain 1	195	411	-	-
	Alju05g1650	442	Pfam	Protein kinase domain	117	382	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju05g1650	442	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	237	249	IPR008271	GO:0004672\|GO:0006468
	Alju05g1650	442	ProSiteProfiles	Protein kinase domain profile.	115	390	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju05g1650	442	Gene3D	Phosphorylase Kinase; domain 1	101	194	-	-
	Alju05g1650	442	CDD	STKc_IRAK	121	386	-	-
	Alju05g1650	442	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	92	194	-	-
	Alju05g1650	442	ProSitePatterns	Protein kinases ATP-binding region signature.	121	145	IPR017441	GO:0005524
	Alju05g1650	442	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	57	421	IPR047117	-
	Alju05g1650	442	SUPERFAMILY	Protein kinase-like (PK-like)	94	385	IPR011009	-
	Alju05g1650	442	SMART	serkin_6	115	390	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju05g1650	442	FunFam	proline-rich receptor-like protein kinase PERK8	195	399	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju05g1650	Alju-ChrAlju05	47600983	47610385	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju05g1650	88	417	Trihelix Transcription Factor Family	AT1G70460	55.301	9.41e-112	343

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Alju05g1650		Pkinase	3.2e-46	CL0016