Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1589 ATGGCTCTCGGACTCGAAATCACGGAGCTTAGGCTGGGCCTTCCCGGCGGTGGTGGGGATGAGGATCAGAACAAGAGTGCTACTGAGTTGACCAACAAGAAGAGGGTGTTCTCGGAGATTGACCGTGTTGATGGTGGTGGCGATGGTGGTGAGGATGAGAAAAGCTGCTCTGGCGACAGGAAGACGCCGGCGAAGAGCCCAGTTGTGGGGTGGCCACCGGTGGGGTCGTACCGGAGGAGGAATAGCATGAGTGAACCCAAAATTTACGTGAAGGTTAGTATGGATGGAGCTCCTTTCTTGAGAAAGGTTGATTTAGGTTTGCAAAAGGGCTACTCTGAGTTAGCTTCAGCCTTGGAGAAGCTCTTTGATTGCCATGGAATTGGAGAGGCATTGAAGGGAGTGGACAATTCTGAAGTCGTTCCCATTTATGAGGACAGGGATGGTGACTGGATGCTTGTTGGAGATGTCCCTTGGGAAATGTTTATAGAGTCATGTAAGAGGCTGAGGATCATGAAGAGATCGGAGGCAAAAGGGTTTGATCTGCAGCCAAAAGGGTCTTTGGAGGGCAAAAAGAAGTGA 579 0.5078 MALGLEITELRLGLPGGGGDEDQNKSATELTNKKRVFSEIDRVDGGGDGGEDEKSCSGDRKTPAKSPVVGWPPVGSYRRRNSMSEPKIYVKVSMDGAPFLRKVDLGLQKGYSELASALEKLFDCHGIGEALKGVDNSEVVPIYEDRDGDWMLVGDVPWEMFIESCKRLRIMKRSEAKGFDLQPKGSLEGKKK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1589 192 MobiDBLite consensus disorder prediction 26 60 - -
Alju05g1589 192 ProSiteProfiles PB1 domain profile. 87 175 IPR000270 GO:0005515
Alju05g1589 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 177 IPR003311 GO:0005634|GO:0006355
Alju05g1589 192 SUPERFAMILY CAD & PB1 domains 81 172 - -
Alju05g1589 192 FunFam Auxin-responsive protein 82 183 - -
Alju05g1589 192 MobiDBLite consensus disorder prediction 11 76 - -
Alju05g1589 192 Pfam AUX/IAA family 9 179 IPR033389 -
Alju05g1589 192 Gene3D - 82 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1589 Alju-ChrAlju05 46490231 46492650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1589 90 177 B3 DNA Binding Superfamily AT4G23980 44.318 1.72e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Alju05g1589 AUX_IAA 8.4e-44 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju05g1589 05 46490231 46492650 Alju11g0793 11 9412910 9416273 CCT