Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1542 ATGAGTAACGCCTCTTCTTCCGCGTTTCAATTTGATGATGATAAGAAGTCCCCTGCCTCACTTGACTTTGAATTTGAATACTCATCGTTCAAGAATCGCGTAAATCCTTCGACACTCCCAAATTCGAGGGCACAGTTACTGAACGATGCGAGGACTCGATATTTCAAGACTCAACTCTGCAGAAGGTTTAGACAGGGAATTTGTACACTAGGGTCGGATTGTAGCTTTGCTCATTGCGTTGGAGAGCTTCGGAGGCAAGAATTTGGTAATGACGATAGGTCATTTCAGGAACCTAAACTATGCAGAATGTTCTATCAAGGGAAACAATGCTCTTATGGAAACACCTGCCGTTTCCTTCATACAAGGCCTGCCAGTGTGAACTCTGGAGACACTGCAACAGAAGTAATTCCTATCGGACATGGTAAAAGAAAATATGATCAATTGGAACTCAAGAGTGGGTTTGATGATAGCTCTAATGCTGAAGTGAATCCAAAGAGAGAGATGTTGAAGATAAAGAAGTGCATCAAGTGGGACATGAAAGGGCATTGCCCGTATGGAGATATGTGTCGCTTTTCTCATGGGGAAGCAGAATTTGTGAAGCTTGATGGCTCCTCAACTGCTGAGTGCAGGGTAGAGCGAACTTCTGCTAATGCTACAAATGTGTCAACTGGCACTTTTCTTAAGAACTTGAAAGAATCATTTGCATGGAATAACAAATTCAACAGACATGAACTACACAGGATCAGTCGCATCTATGCTGATTGGATTGAAAAATAA 777 0.4221 MSNASSSAFQFDDDKKSPASLDFEFEYSSFKNRVNPSTLPNSRAQLLNDARTRYFKTQLCRRFRQGICTLGSDCSFAHCVGELRRQEFGNDDRSFQEPKLCRMFYQGKQCSYGNTCRFLHTRPASVNSGDTATEVIPIGHGKRKYDQLELKSGFDDSSNAEVNPKREMLKIKKCIKWDMKGHCPYGDMCRFSHGEAEFVKLDGSSTAECRVERTSANATNVSTGTFLKNLKESFAWNNKFNRHELHRISRIYADWIEK 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1542 258 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 79 IPR000571 GO:0046872
Alju05g1542 258 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 172 195 IPR000571 GO:0046872
Alju05g1542 258 ProSiteProfiles Zinc finger C3H1-type profile. 54 81 IPR000571 GO:0046872
Alju05g1542 258 PANTHER CCCH ZINC FINGER/TIS11-RELATED 40 124 IPR045877 GO:0003729
Alju05g1542 258 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Alju05g1542 258 ProSiteProfiles Zinc finger C3H1-type profile. 168 196 IPR000571 GO:0046872
Alju05g1542 258 SUPERFAMILY CCCH zinc finger 167 198 IPR036855 GO:0046872
Alju05g1542 258 SMART c3hfinal6 54 80 IPR000571 GO:0046872
Alju05g1542 258 SMART c3hfinal6 97 122 IPR000571 GO:0046872
Alju05g1542 258 SMART c3hfinal6 168 195 IPR000571 GO:0046872
Alju05g1542 258 Gene3D - 97 123 - -
Alju05g1542 258 Gene3D - 164 200 - -
Alju05g1542 258 Gene3D - 49 86 - -
Alju05g1542 258 SUPERFAMILY CCCH zinc finger 53 84 IPR036855 GO:0046872
Alju05g1542 258 SUPERFAMILY CCCH zinc finger 95 123 IPR036855 GO:0046872
Alju05g1542 258 Pfam CCCH-type zinc finger 99 120 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1542 Alju-ChrAlju05 45674883 45676702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1542 56 121 C3H Transcription Factor Family AT1G68200 35.211 5.62e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju05g1542 zf-CCCH 1.3e-05 CL0537