Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1521 ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGACAGCGTCATTGGGGTTCATGGGTTTCCGAGATTCGCCATCCTTTATTGAAAAGAAGGGTGTGGCTAGGGACGTTTGATACTGCAGAAGAAGCAGCACGAGCATACGATGAAGCGGCCGTTTTGATGAGTGGTAGAAATGCCAAAACAAACTTCCCAGTGGTGTCAAACAGTAATAACAATAACAATCAAAATCACCATTCATCATCATCTTCTTCTTCATCTTCTTCCCCGTCATCTTTTTCTGAAGCTCTCAGTGCAAAGCTTCGGAAGAGCTGTAAATCACCATCACCATCTCTCACTTGCTTGAGGCTGGACACAGAGAATTGTCACATCGGAGTGTGGCAGAAGCGAGCAGGGCCTCGCTCTGACTCCAACTGGGTCATGATGGTGGAGCTGGAAAGGAAGAAACTTGAAGGCTCGGAAATGACAACTGCAACAGAGTCACCGGCGCTGGAGACGGAGACAGAGACAGAGGAAGAGAAGGTGAAGCCAGAAGAAGAAGAAGAAGAAGAAGAAGACAACGGTCATGATGAGCTGGACGAGGAACAGAAGATGGCGTTGCAGATGATCGAAGAACTGCTTAATAGGAACTGA 627 0.4721 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFDTAEEAARAYDEAAVLMSGRNAKTNFPVVSNSNNNNNQNHHSSSSSSSSSSPSSFSEALSAKLRKSCKSPSPSLTCLRLDTENCHIGVWQKRAGPRSDSNWVMMVELERKKLEGSEMTTATESPALETETETEEEKVKPEEEEEEEEDNGHDELDEEQKMALQMIEELLNRN 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1521 208 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Alju05g1521 208 MobiDBLite consensus disorder prediction 170 189 - -
Alju05g1521 208 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 175 - -
Alju05g1521 208 MobiDBLite consensus disorder prediction 62 91 - -
Alju05g1521 208 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Alju05g1521 208 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Alju05g1521 208 Coils Coil 187 207 - -
Alju05g1521 208 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Alju05g1521 208 MobiDBLite consensus disorder prediction 148 194 - -
Alju05g1521 208 Pfam AP2 domain 6 50 IPR001471 GO:0003700|GO:0006355
Alju05g1521 208 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Alju05g1521 208 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Alju05g1521 208 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Alju05g1521 208 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1521 Alju-ChrAlju05 45460992 45462395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1521 1 208 AP2-EREBP Transcription Factor Family AT1G15360 61.574 1.70e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju05g1521 AP2 6.1e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju05g1521 05 45460992 45462395 Alju05g1521 05 45460992 45462395 ECH