Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1468 ATGCTGACGCAGGCAATAACAACCAGTTCGAGTACAGATATAGCTGGACCCTCGACGGACGAAATTATCCTTTCAGGCGAGCGAAGTGAATCTTCATTCTCGTCATTCTCTTTGTCCGATATAACTCAGGCTTTTCCTTTCTCTTCTGGAAACCCTAGAATTGAGGAGACTAGAGGGGTCATGCATCTCTATCGTGAGGATCCTACTTCCTCATCGCCTTCTGATCTTCCTGTTGTACGGAAAGAACTTGTCTGTGTGCTTGGAGTGCCAAATCACATGACATATGCGGATTTTTGCCAGTTCTGCGGTTCATTTATTCTGCATATCTTAGAGATGCGGATTGTCAGAAATGATGGGATGGAGGATCAGTACAGTGTTTTAATTCGTTTTGATGACCAAGATTCTACAGATGGGTTCTACAAGCATTATAATGGGCGTCGTTTCTCATCTATGGAGGTGGAAGTTTGCCATGTTCTGTTCGCATTGGATGTGCAGTACACTGGCCTGATTGAACATGCACAAGCATCTAATGCTAGCTCGACTGAACAGCCTACATGTCCAGTGTGCTTAGAGCGATTGGATCAAGATACAAGTGGAATTCTTACAACCATTTGCAATCATTCTTTCCATTGTTCCTGCATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGGTATTGTCAGCAGCAGGCTGAAAAATCTACATGTTTTGTTTGTCAAACCACTGAAAACCTCAGCATATGCGTTATTTGTGGGTTTGTTGGCTGTGGAAAATACAAAGCAGGACATGCCAAATTACACTGGAAAGAGACACAGCATTGCTACTTCCAAGAAGTGGAAACACAGCGAGTATGGGATTATGTGAAAGATAACTATGTTCATAGACTAATCCTGTCCAAAACTGATGGGAAGTTAGTTGAGTTAAACTCTCACTGTGAGCATACAGGAAATGGATGCGGAAGTTGCAGCTGTGAGGATAATGCTATGAGTGAGGCTATACTTAACAGCAAAGTCGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACACAACTTGAAAACCAAAAATTATACTTTGAGTCGTTACTACAAGAAGTAAAGGAAGAAACTGAAAGAGAAATTTCTAAAGCTGTTGAGAAGGCCGTTGCTGTTAAACTGCAGAAGCTGCAGTCCAAGCTTGACAGATGTTATAAGGAGAAGAAATTATTGGATGATCTAAATGAGAATCTGCTGAAAAATCATGAGATCTGGAAAGCCAAGATGCTTGAGATTGAAGAAAGGGAGAAAAAGGCCATAAAACTCAAGGATGATAAAATAAGGGCACTGGAAGAGCAGGTGAAACATATGTTACGAGTTCTCATGATTCGTCTTGAAGGTGGGGAGACAACTGAACAGCTGTCCGGGTCAGACGAAATAAAAGACAGAACTGCTGTTCCCACCTAA 1449 0.4175 MLTQAITTSSSTDIAGPSTDEIILSGERSESSFSSFSLSDITQAFPFSSGNPRIEETRGVMHLYREDPTSSSPSDLPVVRKELVCVLGVPNHMTYADFCQFCGSFILHILEMRIVRNDGMEDQYSVLIRFDDQDSTDGFYKHYNGRRFSSMEVEVCHVLFALDVQYTGLIEHAQASNASSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSTCFVCQTTENLSICVICGFVGCGKYKAGHAKLHWKETQHCYFQEVETQRVWDYVKDNYVHRLILSKTDGKLVELNSHCEHTGNGCGSCSCEDNAMSEAILNSKVEAIVNEYNELLATQLENQKLYFESLLQEVKEETEREISKAVEKAVAVKLQKLQSKLDRCYKEKKLLDDLNENLLKNHEIWKAKMLEIEEREKKAIKLKDDKIRALEEQVKHMLRVLMIRLEGGETTEQLSGSDEIKDRTAVPT 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1468 482 SUPERFAMILY RING/U-box 176 227 - -
Alju05g1468 482 ProSiteProfiles Zinc finger RING-type profile. 186 226 IPR001841 -
Alju05g1468 482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 296 IPR013083 -
Alju05g1468 482 Pfam Ring finger domain 185 226 IPR001841 -
Alju05g1468 482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 222 IPR013083 -
Alju05g1468 482 PANTHER BRCA1-ASSOCIATED PROTEIN 9 481 - -
Alju05g1468 482 SMART ring_2 186 225 IPR001841 -
Alju05g1468 482 CDD RING-H2_BRAP2 184 227 IPR047243 -
Alju05g1468 482 ProSiteProfiles Zinc finger UBP-type profile. 220 313 IPR001607 GO:0008270
Alju05g1468 482 Pfam BRCA1-associated protein 2 77 173 IPR011422 -
Alju05g1468 482 Pfam Zn-finger in ubiquitin-hydrolases and other protein 237 296 IPR001607 GO:0008270
Alju05g1468 482 Coils Coil 351 447 - -
Alju05g1468 482 SMART Zf_UBP_1 236 285 IPR001607 GO:0008270
Alju05g1468 482 SUPERFAMILY RING/U-box 202 301 - -
Alju05g1468 482 CDD RRM_BRAP2_like 84 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1468 Alju-ChrAlju05 44633431 44637360 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1468 182 226 C3H Transcription Factor Family AT1G72220 48.936 1.95e-07 51.2