Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1466 ATGGATGATGCTGAAGACTTCCACGGCCAATTTTGTCACATGATGATGTCTTTTGATAAGGACGATGAAGAGTTTCTCAGAAACATTCTTCATCAGCAGCCTGCAGCTGGTGGAAATAATAATAATAATAATAATAATCACTTGTCTTCTTCTTCTTCTCAAACCAAAGATAAATCATCCTTTCCCACGGCCAGCTCCGGCGGTAACCGTTGTGGTGTTGGTTTGAATGAAGACGACAAAAGCCGCGTGCTGTCTGCTAATAAAGCTTGCATTTTAGCATTTGATCAGTCCAACGTTTTACCAGCAGAAGAAGAAGGAATCCCAAAACGCGAAGAATCTAGCACCTCCGAACTTTGTTCATTAAAAAGGAACAGAGATCAGACATGTAATAATGTTGTTGAGCCAAGAAAGAAGACTAGAAGCTGTGCGGAGACAGCGAATCACATCATGGTCGAGAGGAGGAGGAGGCAACAACTCACAGAGAGATTTATTGCACTTTCTGCAACTATTCCGGGCTTGAAGAAGATGGACAAAGCCACGATTCTTCAAGAAGCGACGAAATACGTGAAGCAGCTTCAAGAACGAGTAACAGAGCTAGAGAAACAAAATAGCATAATAATAAACACTTCTTCATCATCATCTTCAGATCAGAAATCATCGATGAGATCGGTAAAGAAATATTGTGAGCTACACAGAGTTAATATTAATGATGATGATGATAAGTGTTGTGAAGCCAAAAATGAAGTGTTGCCTCAGATTGATGCAAAAGTGTTGGAGAATCAAGTGCTGTTTGGGATCTATTGTGAGAAGCGAAAGGGCATTGAGTTTAAAATATTGAATTTGCTTGAAAGTTTTCATCTTTATGTCACTAGTAGCAGCGTATTGCCATTTGGGAATTCCACTCTTGGTATCACCATCATTGCCCAGATGGGGGAGGAATACAGAATGGCAGTGAATGAAGTGATGAAAAACCTACGACAAGTGCTATCAAAGTCGCAGGAAGAAGTTGATCCGTACTAG 1020 0.4049 MDDAEDFHGQFCHMMMSFDKDDEEFLRNILHQQPAAGGNNNNNNNNHLSSSSSQTKDKSSFPTASSGGNRCGVGLNEDDKSRVLSANKACILAFDQSNVLPAEEEGIPKREESSTSELCSLKRNRDQTCNNVVEPRKKTRSCAETANHIMVERRRRQQLTERFIALSATIPGLKKMDKATILQEATKYVKQLQERVTELEKQNSIIINTSSSSSSDQKSSMRSVKKYCELHRVNINDDDDKCCEAKNEVLPQIDAKVLENQVLFGIYCEKRKGIEFKILNLLESFHLYVTSSSVLPFGNSTLGITIIAQMGEEYRMAVNEVMKNLRQVLSKSQEEVDPY 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1466 339 Pfam Helix-loop-helix DNA-binding domain 146 193 IPR011598 GO:0046983
Alju05g1466 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Alju05g1466 339 MobiDBLite consensus disorder prediction 33 70 - -
Alju05g1466 339 PANTHER BHLH TRANSCRIPTION FACTOR 33 331 - -
Alju05g1466 339 SMART finulus 149 198 IPR011598 GO:0046983
Alju05g1466 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 206 IPR036638 GO:0046983
Alju05g1466 339 Coils Coil 182 209 - -
Alju05g1466 339 MobiDBLite consensus disorder prediction 33 73 - -
Alju05g1466 339 Gene3D - 143 215 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1466 Alju-ChrAlju05 44578269 44580587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1466 148 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 42.932 1.04e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju05g1466 HLH 2e-11 No_clan