Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1440 ATGGTACCAGCGACCACCGATGATAAAGCCGGTTATGAGAAACATGAAGCGGCAAACACGCGTGCTTGTTCGCTAAAACGGACTCCGGAAAACAATGGCAGTGACTTAAAGGCCCATCAAAAGACAAGGAAGAGTAGAAGTACATCTGAGTCAATGGATCACATCATGTCTGAGAGAAAAAGGAGACAAGAACTCTCTGAGAAGTTTATTGCACTCTCAGCTACAATTCCTGGTTTGAAGAAGATTGACAAGTCATCTGTATTAAGCGAAGCTGTCAGTTACATGAAAACACTTAAAGAACGAGTGAGTGAGTTAGAGGAAGAGAACAAGAAGATAAGAGATGATAGCGAGTCATTATTATTAAAGTCAAGCATAAATAAATCACCATGCCACCACCTCAATGCTAAGGATAATGATCATCATCATCATCAAGAAACAATATCTTCTTCCGAAACAATGATGAGTGGCTCTGATGATAAATGCTTCAGAATAATCAACGAAGCATTGCCTGAGGTTGAAGCAAGATTCTTGCACAACCAAGTTCTCATTAGAATCCTCTGTGAGAAGCACAAAAATGTGATGCTTACTATATTGGCCCAACTCAACAGCCTCCATCTCTCCATTATCAACTCTAGCGTCTTGAACTTTGCCAATTCCGCTCTTGACATCACCATTATAGCTGAGGTTGAGGAACACAAAATAGAAGTGAAGGAAGTCGTGAAAAACCTTCGATTGGCTCTGTTGGAGACCTCTCACAGCCAATGA 765 0.4105 MVPATTDDKAGYEKHEAANTRACSLKRTPENNGSDLKAHQKTRKSRSTSESMDHIMSERKRRQELSEKFIALSATIPGLKKIDKSSVLSEAVSYMKTLKERVSELEEENKKIRDDSESLLLKSSINKSPCHHLNAKDNDHHHHQETISSSETMMSGSDDKCFRIINEALPEVEARFLHNQVLIRILCEKHKNVMLTILAQLNSLHLSIINSSVLNFANSALDITIIAEVEEHKIEVKEVVKNLRLALLETSHSQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1440 254 PANTHER BHLH TRANSCRIPTION FACTOR 26 249 - -
Alju05g1440 254 MobiDBLite consensus disorder prediction 32 61 - -
Alju05g1440 254 Coils Coil 88 122 - -
Alju05g1440 254 MobiDBLite consensus disorder prediction 134 154 - -
Alju05g1440 254 Gene3D - 40 121 IPR036638 GO:0046983
Alju05g1440 254 SMART finulus 55 104 IPR011598 GO:0046983
Alju05g1440 254 MobiDBLite consensus disorder prediction 1 61 - -
Alju05g1440 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 98 IPR011598 GO:0046983
Alju05g1440 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 114 IPR036638 GO:0046983
Alju05g1440 254 Pfam Helix-loop-helix DNA-binding domain 54 98 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1440 Alju-ChrAlju05 43757960 43761410 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1440 45 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.078 8.14e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju05g1440 HLH 4.3e-08 No_clan