Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1434 ATGGCAACCTCGTCTTCTCAGTTATCTTATATTCTATCTTTCGATAACTCAACTATAATAACGGTGAACACCGATGATGATAACGCCGGTTATGAGAAATTAACATTAACCTGCAAACACGCGTGCTTCTTCACTAAAGTGGACTCTGGAAAACAATCACAGCTGAGGAACACAAATATAAGTGAAGGAAGTTGTGAAAAAGCTTCGATTGGCTCTCTTAGAGACCTCTCAACCAATACATATATGGATAAGGACGATTTTTTGAATGAACTCAGCCTCAATGACTCCATTTTTGAGGAGGACCTCTTTATTAGGGAGATCCTTCCCCAACCGTGTTTCTCTTCCGTGAGTGACATTATCAACACCATCACCACCGCTGATACTGGTGGTGCTGCGGTAACAACCACCACTGTCAGTAGCTTATCCTCCGGCGCCAGCCAATCCAAACATGACAGCCCCAGTTCGGGATATGGTAGTATATGCGACAAACCGGCAACCTCATCTTCTCTGTCAACTTATATTCTATCTTTCGATAACTCAACTATAATACCGGCGACCATCGATGATAACGCCGGTTATGAGAAACATGAACCTGCAAACAAGCGTGCTTCTTCACTAAAACGGACTCCTGAAAACAATGAGAGTGAGTCAAAGGCCCATCAAAAGAAAAGGAAGAATAGAAATTCATCTGAGACATTGGATCACATAATGTCTGAGAGAAAAAGGAGACAACAACTCTCTGAGAAGTTTATTGCCCTCTCAGCTACAATTCCTGGTTTGAAGAAGATCGACAAGTCGTCTGTACTAAGCGAAGCTATCAATTACATGGAGAAACTTAAAGAACGAGTGAGAGAGTTAGAGGAGCAGAACAAGAAAATAAGAGATCATAGCGAGTCATTATTATTAATGTCAAGCATAAAGAAGAAACCCTCATGCCACCTCCTCAACGCCGAAGATGATCATCATCATCATCAAGACACAATATCTTCTTCTGAAACAATGAGCTCTAATGACAATTGCTTCAGAATAATCAACGAAGCATTGCCTGAGGTTCAAGCAAGAGTGTTACACAACCAAGTTCTCATTAGAATCCTCTGTGAGAAGCATGAAAGTGTGATGCTTACCATATTCGCCCAACTCAAAAGCCTCCATTTTTCTATTATCAACTGTAGCATCTTAAATTTTGCCAATTCCGCTCTTGACATCACCATTATAGCTGAGGTTGAGGAACACAAAATAGAAGTGAAGGAAGTTGTGAAAAAGCTTCGATTGGCCCTGTTGGAGACCTCTCACAACCAAAATTGGAAGATCAAGGAAAAGAAGATTATGAAATCCTATGGTGAAGAATTATTTTTAGAAGCTTGA 1365 0.4066 MATSSSQLSYILSFDNSTIITVNTDDDNAGYEKLTLTCKHACFFTKVDSGKQSQLRNTNISEGSCEKASIGSLRDLSTNTYMDKDDFLNELSLNDSIFEEDLFIREILPQPCFSSVSDIINTITTADTGGAAVTTTTVSSLSSGASQSKHDSPSSGYGSICDKPATSSSLSTYILSFDNSTIIPATIDDNAGYEKHEPANKRASSLKRTPENNESESKAHQKKRKNRNSSETLDHIMSERKRRQQLSEKFIALSATIPGLKKIDKSSVLSEAINYMEKLKERVRELEEQNKKIRDHSESLLLMSSIKKKPSCHLLNAEDDHHHHQDTISSSETMSSNDNCFRIINEALPEVQARVLHNQVLIRILCEKHESVMLTIFAQLKSLHFSIINCSILNFANSALDITIIAEVEEHKIEVKEVVKKLRLALLETSHNQNWKIKEKKIMKSYGEELFLEA 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1434 454 PANTHER BHLH TRANSCRIPTION FACTOR 136 429 - -
Alju05g1434 454 Gene3D - 220 302 IPR036638 GO:0046983
Alju05g1434 454 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 279 IPR011598 GO:0046983
Alju05g1434 454 Pfam Helix-loop-helix DNA-binding domain 235 279 IPR011598 GO:0046983
Alju05g1434 454 MobiDBLite consensus disorder prediction 189 235 - -
Alju05g1434 454 SMART finulus 236 285 IPR011598 GO:0046983
Alju05g1434 454 MobiDBLite consensus disorder prediction 190 235 - -
Alju05g1434 454 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 233 299 IPR036638 GO:0046983
Alju05g1434 454 Coils Coil 269 299 - -
Alju05g1434 454 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1434 Alju-ChrAlju05 43711393 43721026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1434 214 426 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.265 2.02e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju05g1434 HLH 1.7e-07 No_clan