LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju05g1429	ATGGGAAGACCCCATCAACGGTATCGTGGAGTACGGCAGAGGCAATGGGGCTCATGGGTCTCCGAGATTCGTCACCCTATCTTGAAGACGAGAATATGGGTGGGGACATTTGAAACAGCAGAAGATGCAGCAAGAGCCTATGATGAAGCAGCCATACTCATGAGTGGTTCTCAAGCCACCACCAACTTCCCCTTGGATCCTAATCTCTCTCCTTCTTCCTCTTCTTCCCTTCTCTCTCCAACTCTCACAACCAAGCTTCTTCAAATGAAGAAACAAGCTCATCGTCGTCGTCGTCATCATAACCAACAGCAGCAGCAGCAGCAACAACAACATACACACACCTCTCTCACCACTGCTCTTCCTTCCGCCGCCAATGCTGTCACCGGACCGAGCTCTGAGACCGGGTCCTGGTCCCCGGAGGGACCACCGTTTCAGCTGCAAGTGCTTGAGGATGATCACATTGAGCAGATGATTCAAGAGTTACTTCACTATGGTTCCATTGAGCTTTCTTCTCCTTAA	519	0.5067	MGRPHQRYRGVRQRQWGSWVSEIRHPILKTRIWVGTFETAEDAARAYDEAAILMSGSQATTNFPLDPNLSPSSSSSLLSPTLTTKLLQMKKQAHRRRRHHNQQQQQQQQQHTHTSLTTALPSAANAVTGPSSETGSWSPEGPPFQLQVLEDDHIEQMIQELLHYGSIELSSP	172

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju05g1429	172	ProSiteProfiles	AP2/ERF domain profile.	7	64	IPR001471	GO:0003700\|GO:0006355
	Alju05g1429	172	CDD	AP2	6	64	IPR001471	GO:0003700\|GO:0006355
	Alju05g1429	172	MobiDBLite	consensus disorder prediction	90	145	-	-
	Alju05g1429	172	Pfam	AP2 domain	7	56	IPR001471	GO:0003700\|GO:0006355
	Alju05g1429	172	Gene3D	AP2/ERF domain	6	66	IPR036955	GO:0003700\|GO:0006355
	Alju05g1429	172	FunFam	Ethylene-responsive transcription factor 2	6	65	-	-
	Alju05g1429	172	SUPERFAMILY	DNA-binding domain	7	65	IPR016177	GO:0003677
	Alju05g1429	172	PRINTS	Ethylene responsive element binding protein signature	30	46	IPR001471	GO:0003700\|GO:0006355
	Alju05g1429	172	PRINTS	Ethylene responsive element binding protein signature	8	19	IPR001471	GO:0003700\|GO:0006355
	Alju05g1429	172	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	6	121	-	-
	Alju05g1429	172	SMART	rav1_2	7	70	IPR001471	GO:0003700\|GO:0006355
	Alju05g1429	172	MobiDBLite	consensus disorder prediction	103	141	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju05g1429	Alju-ChrAlju05	43676422	43677533	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju05g1429	1	171	AP2-EREBP Transcription Factor Family	AT5G25190	56.000	1.93e-56	174

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju05g1429		AP2	2.8e-12	CL0081