Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1425 ATGGATGGTTGCAAAAAATCCTCCATATCGAACCAGTCATACAATTCTCTCTATGTCAATCCTCTCACTGAACTCAGGCATAGCCGAAGCTGTAGCTGTGATTATGGCCGTTTAGCTACCAAAGGTGACGACTTTGAAGGTTTTAATTACCGAGCCATGAAAATCTTGACGGACAGCAAAGAGAATGTGACGCCTAACAAGAAAGAAGGTGTAGTTTCTTCTGGTGATGATGACAAGGAAAACGCAGTGCCCAGAAAGTTCTCAAATTCTAGGTCCTTGTCCACTGATAGGATATTGAAGCCTACTTCGCTTAAGTTCTGCATGCAAATGAATGATTCTGAAAAGGCTTTTGGGTCTTCTAAGATATGGGATCGTTTTGATTTGGAGAATTCCAGTTCTATGAATGTTTGGGACTTTTCTGATTCTGAAGCAGCTCCAGCTTCATCCTGGTCAACTCTGCCAAACAAGTCTTTGATCTGTAGACCATTGCCCGTTGATGTTGGAAGATGTACATGTGTTATTGTGAAGGAAGCATCGCCAGAAGGACTATCAGGGGGCACATTGTTTTCTCTTTATACCTATGAAGGGAAAGGAAGACAGAATAGGAAACTGGCTGTGGCTTACCATAAGAGGCGAAATGGGAGATCTCAGTTCACCATAGCTCAGAATGTAAAAGGACTTTTGTCCAATTCAGATGATAGTTTTCTTGGAACAGTGATAGCCAACTTCATGGGTTCAAAATACCACATATGGGATCAGGGATATCGTCATGATTGCGGGGGAAAACAACCGAAACCGCCTCTTTCTGTCGTGGCATTCATACCAACTATAGCAACATGTACTGGAAGTTACAGAAGCATGAGGGCATATGTACCCAAACATCAATCTATGTCACTGAAGAACACAAGTCAGGTACAACATATCAAAGGACTGCCAACAGATTGGGAGGAAAAGCTGGACAAAGTCCATCAATTATTCTCAAGAGTTCCAATTTACAACAAGAGTTCAAAGCAGTTTGAACTTGACTTCAGAGATAAAGGAAGATCAGGACTTCAGATCCAGACATCAGTAAAAAATTTCCAGCTGACTTTGGAGGAGAATGGGAGGCAAACAATTCTGCAGCTAGGCAGGGTAGCAAAATCAAAGTTTGTTTTGGATTACAGATATCCTTTGACAGGTTACCAGGCATTCTGCATATGCTTGGCCTCCATTGACACAAAGCTTTGCTGCACAGTTTAG 1239 0.4205 MDGCKKSSISNQSYNSLYVNPLTELRHSRSCSCDYGRLATKGDDFEGFNYRAMKILTDSKENVTPNKKEGVVSSGDDDKENAVPRKFSNSRSLSTDRILKPTSLKFCMQMNDSEKAFGSSKIWDRFDLENSSSMNVWDFSDSEAAPASSWSTLPNKSLICRPLPVDVGRCTCVIVKEASPEGLSGGTLFSLYTYEGKGRQNRKLAVAYHKRRNGRSQFTIAQNVKGLLSNSDDSFLGTVIANFMGSKYHIWDQGYRHDCGGKQPKPPLSVVAFIPTIATCTGSYRSMRAYVPKHQSMSLKNTSQVQHIKGLPTDWEEKLDKVHQLFSRVPIYNKSSKQFELDFRDKGRSGLQIQTSVKNFQLTLEENGRQTILQLGRVAKSKFVLDYRYPLTGYQAFCICLASIDTKLCCTV 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1425 412 MobiDBLite consensus disorder prediction 61 87 - -
Alju05g1425 412 Pfam Tub family 161 406 IPR000007 -
Alju05g1425 412 PRINTS Tubby superfamily signature 235 259 IPR000007 -
Alju05g1425 412 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Alju05g1425 412 PRINTS Tubby superfamily signature 368 387 IPR000007 -
Alju05g1425 412 PRINTS Tubby superfamily signature 389 411 IPR000007 -
Alju05g1425 412 Gene3D Tubby Protein; Chain A 152 411 IPR025659 -
Alju05g1425 412 PANTHER TUBBY-RELATED 80 409 - -
Alju05g1425 412 MobiDBLite consensus disorder prediction 61 85 - -
Alju05g1425 412 SUPERFAMILY Tubby C-terminal domain-like 147 411 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1425 Alju-ChrAlju05 43578638 43582044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1425 58 305 TUB Transcription Factor Family AT1G16070 54.615 4.22e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Alju05g1425 Tub 1.7e-40 CL0395