Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1405 ATGGACAGCAACCAACCAGACATGGCAACCCAGAAACAGACAGAAACAGGGGATCAACAACAACGTTGTTCTTCATCTTCTTCGCCGCCTCGTGCTTGTCTAGATCTAAGTCTCTCTAACTACCACTCCTCATCATCTCCTGAATCTCGCCATGGCGGCAGGATCTTCTCCTGCAACTACTGTCACAGAAAGTTTTACAGCTCGCAGGCACTTGGGGGTCACCAGAACGCACACAAGCGAGAGAGAACTCTTGCAAAAAGACATGATCACAACAACACCAACAACAATGTTGGTAATGGTTCTGCAGATTTTGACCGATTAAGGTATTATTATTATTCATGTATGGCCTCTCTTCCTCTGCATGGCTCCTCCTACAACAGACCACTTGGGATTCAGCTTCATTCCATGATTCACAAGCCCACCTCTTCTTCTTCTTCCTCCTTTCAACCACCTCGTTTCCAGAAGAATATTCCATTATTCGAAGACTCCCATGTTTGGACAGAATTAACTGAATCATCGTCATCTTCTTCTTCTTCTTCTTTCTTAACTTCTGGGATTCCAAGGTTTTCTCCAAGGCCTGTTACAGGGGATCAGCTTCACAAACTTGACTTGTCCCTCAAACTGTGA 627 0.4498 MDSNQPDMATQKQTETGDQQQRCSSSSSPPRACLDLSLSNYHSSSSPESRHGGRIFSCNYCHRKFYSSQALGGHQNAHKRERTLAKRHDHNNTNNNVGNGSADFDRLRYYYYSCMASLPLHGSSYNRPLGIQLHSMIHKPTSSSSSSFQPPRFQKNIPLFEDSHVWTELTESSSSSSSSSFLTSGIPRFSPRPVTGDQLHKLDLSLKL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1405 208 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 33 181 IPR044246 GO:0009788
Alju05g1405 208 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Alju05g1405 208 MobiDBLite consensus disorder prediction 1 31 - -
Alju05g1405 208 SUPERFAMILY beta-beta-alpha zinc fingers 52 84 IPR036236 -
Alju05g1405 208 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Alju05g1405 208 Gene3D Classic Zinc Finger 35 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1405 Alju-ChrAlju05 43270315 43270941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1405 54 208 C2H2 Transcription Factor Family AT1G80730 45.833 6.38e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju05g1405 None None None