Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1403 ATGTTCAACTCCTGCTACACTAATCCATACGACCAAAGGGATAAATTTGTGAGGTACACAATGTTGGATTCTAACAGTTCAGTTTCATCCAACCCAAGTGGAGGATTCATGAAGAAGCTCAGATTTAATATAGAAGGTAAGCCACGCGAAAAGAAGAATGCATCAAAATCCTTTAGGATGGGAATGAAGAGAGGATCAGATGGATTAAAGACATTTGGAAGATCACTGAAAAGTGGAGTCACCTGGCAAGTGTTCCCAGAAGATCTTAGAGTATCAGAGACTAAAATTTTTGATCCTCAAGACAAGACCCTTTTGTTGTGGAACAAGTTTTTTGAGCTTTTGTGTATTATTTCAGTTTCATGTGATCCTCTCTTCTTCTATCTTCCTTACTTCAACCTCAGATCTCACTGCCTTGCCATTGATACTGCACTTGCTTCTACTGCTATCATCCTGAGATCTATACTTGATGTTATCTATCTCATCCGAATCGGTTTCCAGTTCCGGACCGCTTATATTGCACCGTCCTCCCGGGTTTTCGGGCGAGGCGAACTTGTCATTGATCCAAAAAAGATTGCCAAGAGATACCTTGGGCGTTACTTCATTATCGATTTCAGTTCTGTGCTGCCATTGCCACAGATTGTGGTGGCTGACTATCTTCGCAAAGCAAAAGGTTTAGAGGTATTAGCCACAAAAACAACGCTATTGAGAGTGGTCATCCTTCAATATATTCCGAGATTTGCTCGCTTCCTCCCTTTAGCTACCGAAGTTAAGAAGACAGCTGCTGTGTTTTCTGATAATGCACTGGTGGGAGCCACCTACTATTTGGTCTGGTACATGCTTGTTAGCCATATAGTAGGGTCTGCGTGGTACTTACTAGCTATTGAAAGGAATGACACATGTTGGCAGCAGGCTTGTGCTGCTGCTGCTTCTCAAGGGTGTATTAAACATTTCTTGTACTGTGAGAGCTCGAATCGGCGCCATCCCGGATACGAAGCCTGGAAAAATGTCAATGGGGATATTCTTGACAGGAATTGTGGAGCTGGAGGTACTGACCCACCATTTGATTATGGAATCTACACTAGAGTTATAGAGAAGGGTATTACAGCCTCCAGTGATATGTGGAGTAAATTCTTTCTTTGTTTCTGGTGGGGCCTTCAAAATGTCAGCACACTTGGGCAGGGGCTTGACACCAGTACTTACATTGGGGAGGCTTGTTTTTCCATTTTTATATGTATTTTGGGGCTTGTCCTTATGGCTCTTCTCATTGGAAAAGTGCAGAACTACCTTCAATCAATTACTGTTCGTCTTGAGGAAATGAGGATCAAGAGGCGTGATTCTGAGCAGTGGATGCATCACCGTTTGCTTCCTCAAGAGCTAAGGGAAAGAGTGAGACGCTATGATCAATACAAGTGGATGGAAACTCGAGGAGTCGACGAAGAGTCCTTAGTGCAGAGTCTTCCGAAAGATCTAAGGAGAGATATCAAACGACATCTTTGCTTGAATTTGGTTAGAAGGGTTCCTCTCTTTGCTAATATGGACGAGCGTTTGTTGGATGCTATCTGTGAGCGTTTGAAGCCTAGTTTGTACACAGATGGAACATACATTGTGAGGGAAGGAGATCCAGTAGTTGAGATGTTCTTCATCATACGCGGTCGTTTAGAGAGTGTGACCACAGATGGAGGAAGAAGTGGATTCTTCAACAGAGGTCTTCTCAAAGAAGGAGATTTCTGTGGAGAAGAGCTTCTAACATGGGCATTAGACCCTAAATCAGCAGCAAACTTACCATCATCCACAAGGACAGTGAAAGCTATCAATGAAGTTGAGGCATTTGCTTTAGAAGCAGAGATGTTGAAATTTGTGGCTTCGCAGTTCAGGCGCCTCCATAGCAGACAGGTTCAGCAGACCTTCCGGTTTTACTCGCAGCAATGGAGAACATGGGCAGCAACTTTCATTCAGGCTGCTTGGAGACGATATACCAAAAGGAAGACAATGGAGTCGATGATGATAGAAGACGAGGAGGAGATGGAGGAATTAGAAGAAGAAGATTATGGTTCTGATGATGATGGAAAAGCCTTGATCTCAAGAACTGAAAGTTCATCATCCAGGACTGGTATTGGTTCAGCCATTTATGCTTCTCACTTCGCTGCTAAGGCACTTCACGGTCATAGGATTCGTTCTCTTAAAAAGCCTCCAGAACCTGACTTTAGTGTTTATGATCATGGAGATTGA 2229 0.4334 MFNSCYTNPYDQRDKFVRYTMLDSNSSVSSNPSGGFMKKLRFNIEGKPREKKNASKSFRMGMKRGSDGLKTFGRSLKSGVTWQVFPEDLRVSETKIFDPQDKTLLLWNKFFELLCIISVSCDPLFFYLPYFNLRSHCLAIDTALASTAIILRSILDVIYLIRIGFQFRTAYIAPSSRVFGRGELVIDPKKIAKRYLGRYFIIDFSSVLPLPQIVVADYLRKAKGLEVLATKTTLLRVVILQYIPRFARFLPLATEVKKTAAVFSDNALVGATYYLVWYMLVSHIVGSAWYLLAIERNDTCWQQACAAAASQGCIKHFLYCESSNRRHPGYEAWKNVNGDILDRNCGAGGTDPPFDYGIYTRVIEKGITASSDMWSKFFLCFWWGLQNVSTLGQGLDTSTYIGEACFSIFICILGLVLMALLIGKVQNYLQSITVRLEEMRIKRRDSEQWMHHRLLPQELRERVRRYDQYKWMETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTDGTYIVREGDPVVEMFFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKSAANLPSSTRTVKAINEVEAFALEAEMLKFVASQFRRLHSRQVQQTFRFYSQQWRTWAATFIQAAWRRYTKRKTMESMMIEDEEEMEELEEEDYGSDDDGKALISRTESSSSRTGIGSAIYASHFAAKALHGHRIRSLKKPPEPDFSVYDHGD 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1403 742 CDD CAP_ED 508 639 IPR000595 -
Alju05g1403 742 Gene3D Helix hairpin bin 436 499 - -
Alju05g1403 742 SUPERFAMILY cAMP-binding domain-like 438 628 IPR018490 -
Alju05g1403 742 Coils Coil 661 681 - -
Alju05g1403 742 ProSiteProfiles cAMP/cGMP binding motif profile. 508 591 IPR000595 -
Alju05g1403 742 SUPERFAMILY Voltage-gated potassium channels 99 430 - -
Alju05g1403 742 Gene3D - 113 434 - -
Alju05g1403 742 Pfam Ion transport protein 106 435 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Alju05g1403 742 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 87 735 - -
Alju05g1403 742 Gene3D Jelly Rolls 506 626 IPR014710 -
Alju05g1403 742 ProSiteProfiles IQ motif profile. 644 673 IPR000048 GO:0005515
Alju05g1403 742 Pfam Cyclic nucleotide-binding domain 529 617 IPR000595 -
Alju05g1403 742 FunFam Cyclic nucleotide-gated ion channel 1 435 499 - -
Alju05g1403 742 MobiDBLite consensus disorder prediction 672 686 - -
Alju05g1403 742 MobiDBLite consensus disorder prediction 672 703 - -
Alju05g1403 742 SMART cnmp_10 508 639 IPR000595 -
Alju05g1403 742 FunFam Cyclic nucleotide-gated ion channel 1 506 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1403 Alju-ChrAlju05 43253175 43258271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1403 1 735 Ion Channels AT1G15990 64.887 0.0 948