Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1363 ATGACCGGTGCTTGCAAAAAGTCCTCCATTCTAGGTCAGTCATATAGTTCTCTCTATGTCAATCCTCTCACTGAACTAAGGCATAGCCGTAGCTGCAGCGACAGTGGCAGCTTAGCTTCCAAATGTCAGAAATGTGAAGATTTCTCGCCCAGAGAAGTTTCAACTGATAATAAAGAGTATGTCACGCCCAAGAAGAAAGATGTAACTCGCTTTTGTGACAAGGAAAATGCAGTGCCTGCAAATGGGTCATCTTATTTGCCTAAACACTTCTCAAAGTCCAAGTCTTTTTCTACAGATAGAATTTTGAAGCCTAACTCGCTTCAGTTCTGTATGCAAATGAACGAGCCTGAAAGGGCTTTTGGGTGCAAGATATGGGATAATGTATATTCTGAAAATTTGAGCTCTTTAAAGATTTGGGATTTCTCTGATTCAGAGGCAGCCCCAGCTTCTTCCTGGTCAACCTTGCCTAATAAGTCTTTGATCTGTAGGCCGTTGCCTGTAGATATTGGAAGGTGTACATGCATCATTGTAAAGGAAGCAAAGACGGAAGGACTATCTGGGGGCACTATGTATTCGCTTTATACTTATGAAGGTCAGGGTCGCCAGAATAGGAAACTAGCTGTTGCTTATCACAAGAGGCGGAATGGGAGGTCTCAGTTCATTGTAGCTCAGAATGTAAAAGGTCTCTTGTCCAATTCAGATGATAGTTTCCTTGGAACAGTAAGGGCTAACCTCCTGGGTTCTAAGTACCAAATTTGGGATCAGGGATATCGCCATAATTTGCACGATAAACAACTAAAACGACCTCTTGCTGTTGTGATGTTTATACCTACAGCGGCAACATGTACTGGAAGCTACAGAGGCATGAGAGCATATGTACCAAAGCATCAATCTATGTCATTAAAGAACATAACCCAGGTACAACATATCAAAGGACTGCCCATAGATTGGGAGGTAAAGTTGAACAAAGTCCATCAACTGTTCTCAAGGGTTCCACTTTACAACAAGACTTCAAAGCAATTTGAACTTGACTTTAAAGATAAAGGAAGAGCAGAACTTAGAATCCAAAGATCGGTAAAAAATTTCCAGCTAACTTTGGAGAATGGGAAGCAGACAATTCTTCAACTGGGTAGAATTGGAAAATCAAAATTTGTTATGGATTACAGATATCCTTTGACAGGTTACCAGGCGTTCTGCTTAACTTTAGCTTCCATTGATACCAAGCTCTGTTGCTGTGTGTAG 1242 0.4122 MTGACKKSSILGQSYSSLYVNPLTELRHSRSCSDSGSLASKCQKCEDFSPREVSTDNKEYVTPKKKDVTRFCDKENAVPANGSSYLPKHFSKSKSFSTDRILKPNSLQFCMQMNEPERAFGCKIWDNVYSENLSSLKIWDFSDSEAAPASSWSTLPNKSLICRPLPVDIGRCTCIIVKEAKTEGLSGGTMYSLYTYEGQGRQNRKLAVAYHKRRNGRSQFIVAQNVKGLLSNSDDSFLGTVRANLLGSKYQIWDQGYRHNLHDKQLKRPLAVVMFIPTAATCTGSYRGMRAYVPKHQSMSLKNITQVQHIKGLPIDWEVKLNKVHQLFSRVPLYNKTSKQFELDFKDKGRAELRIQRSVKNFQLTLENGKQTILQLGRIGKSKFVMDYRYPLTGYQAFCLTLASIDTKLCCCV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1363 413 PANTHER TUBBY-RELATED 44 410 - -
Alju05g1363 413 Pfam Tub family 163 407 IPR000007 -
Alju05g1363 413 SUPERFAMILY Tubby C-terminal domain-like 149 411 IPR025659 -
Alju05g1363 413 Gene3D Tubby Protein; Chain A 154 412 IPR025659 -
Alju05g1363 413 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Alju05g1363 413 PRINTS Tubby superfamily signature 237 261 IPR000007 -
Alju05g1363 413 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Alju05g1363 413 PRINTS Tubby superfamily signature 350 366 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1363 Alju-ChrAlju05 42652417 42655288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1363 20 307 TUB Transcription Factor Family AT1G16070 52.381 1.99e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Alju05g1363 Tub 2.3e-38 CL0395