Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju05g1354 | ATGGCTCAAAATTCCGCCTCTGATATTCTCTGTTCTGATGATTCTTTAATCCTTGCTCTGTTTCACGATGATGATGATGATTTTTGTGCCCCACTTACCGATGATGAATGTGCCAAACGCTTGCAGTTTCAGGAAACCCTCTATTCCTCCATCATCACTTCAAAAAATCCCAAAAATGATCCTCCATCATCGTCGTCGTCGTCATCGTCACCACCATCTTCTTCTTCTTTGCACCTTTTACCTTCATCTTCATCACCTTCCCCGGCTTTGAAAATGGCTGACATTTGCTCTACCCCAGAAACTGAGCACCTGAAATACTCAGATGAAACGGATGAATCCGGCCAAGTCATATGCGAAATCTGTGCAGAAACTAAAGAGGCTTCCCAGATTTTCGAAAATCAGAGATGCCCCCACTCGTTTTGTTTTGATTGTGTCACAAAACATGTGGCAACAAAAATTCAGGAGAACGTTACAGAAGTTTCTTGCCCTGGTTTGGATTGTAGGAATGTTGTTGGGCTTGATGCTTGTCGGCCATGGCTTCCCAAGGACTTGCTTGATAGGTGGGATCAAGCTCTGTGTGAAGCTATGTTTCTGGCAACTCCTAAATTTTACTGCCCCTTTAAGGATTGTTCAGCTATGTTGCTGATTGATAATGAAGAAGAAGATCGTCAAGCTATAAGGGAAGCAGAGTGCCCTTTTTGCCACAGATTGTTCTGTGCAAGTTGTGAGGTGCCATGGCATCCTGGGGTTGAATGTGAGGAATTTCAGACTCTGAATGAGAATGAAAAAGAGAGGCAAGATTTGATTGTGAGAGAGCTTGCTAAAGAGAAGAAATGGAGAAGGTGTCCCAATTGTAAGTTCTATGTAGAGAAGAATGGAGGATGCTTGCACATCACTTGCAGGTGCAAATATGAGTTTTGCTATGGGTGTGGAGAACAGTGGACTTCTACTCATGGAGGCTGCCAAACAAATTAA | 975 | 0.4328 | MAQNSASDILCSDDSLILALFHDDDDDFCAPLTDDECAKRLQFQETLYSSIITSKNPKNDPPSSSSSSSSPPSSSSLHLLPSSSSPSPALKMADICSTPETEHLKYSDETDESGQVICEICAETKEASQIFENQRCPHSFCFDCVTKHVATKIQENVTEVSCPGLDCRNVVGLDACRPWLPKDLLDRWDQALCEAMFLATPKFYCPFKDCSAMLLIDNEEEDRQAIREAECPFCHRLFCASCEVPWHPGVECEEFQTLNENEKERQDLIVRELAKEKKWRRCPNCKFYVEKNGGCLHITCRCKYEFCYGCGEQWTSTHGGCQTN | 324 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju05g1354 | 324 | MobiDBLite | consensus disorder prediction | 52 | 92 | - | - | |
| Alju05g1354 | 324 | ProSiteProfiles | TRIAD supradomain profile. | 114 | 324 | IPR044066 | - | |
| Alju05g1354 | 324 | FunFam | RBR-type E3 ubiquitin transferase | 113 | 199 | - | - | |
| Alju05g1354 | 324 | ProSitePatterns | Zinc finger RING-type signature. | 136 | 145 | IPR017907 | - | |
| Alju05g1354 | 324 | ProSiteProfiles | Zinc finger RING-type profile. | 118 | 163 | IPR001841 | - | |
| Alju05g1354 | 324 | CDD | Rcat_RBR_unk | 278 | 314 | - | - | |
| Alju05g1354 | 324 | Pfam | Zinc finger, C3HC4 type (RING finger) | 118 | 163 | IPR018957 | GO:0046872 | |
| Alju05g1354 | 324 | SUPERFAMILY | RING/U-box | 263 | 322 | - | - | |
| Alju05g1354 | 324 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 58 | 314 | IPR031127 | GO:0004842|GO:0016567 | |
| Alju05g1354 | 324 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 197 | IPR013083 | - | |
| Alju05g1354 | 324 | SUPERFAMILY | RING/U-box | 192 | 256 | - | - | |
| Alju05g1354 | 324 | MobiDBLite | consensus disorder prediction | 52 | 91 | - | - | |
| Alju05g1354 | 324 | SMART | ibrneu5 | 262 | 321 | IPR002867 | GO:0008270 | |
| Alju05g1354 | 324 | SMART | ibrneu5 | 186 | 252 | IPR002867 | GO:0008270 | |
| Alju05g1354 | 324 | CDD | BRcat_RBR_unk | 199 | 255 | - | - | |
| Alju05g1354 | 324 | FunFam | RBR-type E3 ubiquitin transferase | 254 | 324 | - | - | |
| Alju05g1354 | 324 | SUPERFAMILY | RING/U-box | 112 | 195 | - | - | |
| Alju05g1354 | 324 | Gene3D | - | 249 | 324 | - | - | |
| Alju05g1354 | 324 | Pfam | IBR domain, a half RING-finger domain | 271 | 321 | IPR002867 | GO:0008270 | |
| Alju05g1354 | 324 | Pfam | IBR domain, a half RING-finger domain | 192 | 252 | IPR002867 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju05g1354 | Alju-ChrAlju05 | 42502440 | 42503807 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju05g1354 | 118 | 311 | C3H Transcription Factor Family | AT2G19610 | 31.000 | 4.64e-23 | 97.1 |