Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1352 ATGGCTGAAGACTCTGCCTTCGTCATGGCTCAAGACTCTGCTTTCTTTGATCCCCGCGAATTGTTTCTACTTTTCATTCAATATATATATTTATTTTCCCCAAAACATGAAGACCATCAACATCTCTCTGAATTGTTTCTCCTTTTCATTGAATATACAAATTTATATTCCCCACAACATGAAGATCATCAACATCTCTCTGATTTTGAATGTCCTGAATTATCTCAAAACAATTCTTCTTCTTCAGCTTCTTCATATGATTCTGCTTCATCTTCTTTTAACCCAGAAACTGAGCATGCGAAGTCTTTAATTGAAACAGAGGAAACCTTTCAAGTGAAGTCTTCAATTGAAACAGAGCAACCCTTGCAAGTCATCATCTGTGAAATCTGTACAGACACCAAAAGAAATACCCAGATGATCAAGAACCAGACATGCCACCATTCATATTGCTCTGATTGCATGACAAAACATGTGGCCACCAAAATCCAAGACAGTATAATAGCGGTTCCATGTCCGGATTTGGATTGTAAAAGTGTTTTTGAGTTAGAAGCTTGTCGCCCATGGCTTCCCAATGACTTAACTGAAAGGTGGGATAGGGTTCTGTGTGAAGCTCTTTTTCTGCAAGTGCCTAAATTTTACTGTCCCTTTGATGATTGTTCAGCCATGATGCTGGTTGAGAATGAGAAAAATCAACAAACTGCAGGGAAAACAGATTGCCCTGTTTGCCACAGAGTGTTCTGTCCCAGGTGTAACGTTCCATGGCATACTGGAGTTGACTGTAAGAAATACCAGAAACTGAATAAGAATAAGAGACAGAGGGAAGATCGGCTTGTGAGAAAGCTTGCTAAAGAAAAGAGATGGCGAAGGTGTCCAAAGTGCAAGTTTTATGTGGAGAAGATAAGTGGATGCTTGCATATCACTTGCAGAGAACAAACTGGTGCAAATATGAGTTTTGTTATGCCTGCGGAAGAGAATGGACTTACATTCATGCAACCAGATGCGGGTGTCTGA 1011 0.3996 MAEDSAFVMAQDSAFFDPRELFLLFIQYIYLFSPKHEDHQHLSELFLLFIEYTNLYSPQHEDHQHLSDFECPELSQNNSSSSASSYDSASSSFNPETEHAKSLIETEETFQVKSSIETEQPLQVIICEICTDTKRNTQMIKNQTCHHSYCSDCMTKHVATKIQDSIIAVPCPDLDCKSVFELEACRPWLPNDLTERWDRVLCEALFLQVPKFYCPFDDCSAMMLVENEKNQQTAGKTDCPVCHRVFCPRCNVPWHTGVDCKKYQKLNKNKRQREDRLVRKLAKEKRWRRCPKCKFYVEKISGCLHITCREQTGANMSFVMPAEENGLTFMQPDAGV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1352 336 FunFam RBR-type E3 ubiquitin transferase 123 208 - -
Alju05g1352 336 Pfam IBR domain, a half RING-finger domain 211 260 IPR002867 GO:0008270
Alju05g1352 336 Gene3D - 257 319 - -
Alju05g1352 336 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 67 312 IPR031127 GO:0004842|GO:0016567
Alju05g1352 336 ProSitePatterns Zinc finger RING-type signature. 145 154 IPR017907 -
Alju05g1352 336 ProSiteProfiles Zinc finger RING-type profile. 127 172 IPR001841 -
Alju05g1352 336 SUPERFAMILY RING/U-box 123 204 - -
Alju05g1352 336 SUPERFAMILY RING/U-box 198 265 - -
Alju05g1352 336 MobiDBLite consensus disorder prediction 71 98 - -
Alju05g1352 336 CDD BRcat_RBR_unk 210 263 - -
Alju05g1352 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 205 IPR013083 -
Alju05g1352 336 ProSiteProfiles TRIAD supradomain profile. 123 336 IPR044066 -
Alju05g1352 336 Pfam Zinc finger, C3HC4 type (RING finger) 127 172 IPR018957 GO:0046872
Alju05g1352 336 SMART ibrneu5 195 260 IPR002867 GO:0008270
Alju05g1352 336 SUPERFAMILY RING/U-box 273 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1352 Alju-ChrAlju05 42451261 42453454 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1352 127 309 C3H Transcription Factor Family AT2G19610 25.131 2.23e-13 68.6