Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1348 ATGGCTCAAGACACTGTCTCTGATCTTCTCTTCGAATTGTTCTTTTTTTCTTCTTTCTTCTTCTGTTTTGTGGCCACCGAACTTCTCTGCGTTGAATACCCATTTTTCTCTGCTCTGTTTTTCCAACAACATGAAGATCATCAATATGTCCCTTTCACTTATTATGAATTTCCTCAACCACCGAAATTGCCCTCCTTCATCACTGCTCAACACAAAAACAATTCTTCATCTTCCTCCTCCTCCTCCTATGCTTCTGCTTCATCTTCTTCTTCTAACCCAGAAAATAAGCATCTGAAGTCTTCAATTAAAACTGAGGAACCCTTGCAAGTGATCTGTGAAATCTGTGCAGAAACTAAACGGATTACACAGATGATCAAGAATAAGACATGCGACCATTCATATTGCTCTGATTGTATGACAAAACATGTGGCCACGAAAATCCAAGACATTATAACAGCAGTTCCATGTCCTGGTTTGGGTTGTAAAAGTGTTTTTGATCTGGAAGCTTGTCAGCCATGGCTTCCCAGGGACTTAATTGAAAGGTGGGATAAGGCTCTTTGTGAAGCTCTGTTTCTGCAAGTGCCTAAACTTTACTGTCCCTTTAAGGATTGTTCAGCGATGATGCTGGTTGAGAATGAGATAGATCGACGAGGTGCAGGGGAAACAGAGTGCCCTGTTTGCCATAGAATGTTCTGTGCAAGGTGTAATGTCCCATGGCATCTTGGAGTTGACTGTGAGGAATATCAGAAATTGAACGAGAACGAGAGACAGAGGGAAGATCTGCTTGTAAGGAAACTTGCTAAAGAGAAGAAATGGAGAAGGTGTCCAAAGTGTAGGTTCTATGTGGAGAAGATAATTGGATGCTTGCACATTACTTGCAGGTCAGCTTTCTGCTACAAATTTATATGGAGCTTTGAACTATTTTCTAGATTGATCCACAAACTCACAGTGCAAATATCAGTTTTGTTATGCATGTGGAGAAGAGTGGAATGCTACACACGTAGGTTGCCAAAGAAATTAGATCCAATGCCAAGGTCTGATGAAGAGAAGATCATTTTCACCTGCCACTTACCATTTTTTGACATGTTTCTTCCTATTACAGGAAAAAAATGA 1113 0.4052 MAQDTVSDLLFELFFFSSFFFCFVATELLCVEYPFFSALFFQQHEDHQYVPFTYYEFPQPPKLPSFITAQHKNNSSSSSSSSYASASSSSSNPENKHLKSSIKTEEPLQVICEICAETKRITQMIKNKTCDHSYCSDCMTKHVATKIQDIITAVPCPGLGCKSVFDLEACQPWLPRDLIERWDKALCEALFLQVPKLYCPFKDCSAMMLVENEIDRRGAGETECPVCHRMFCARCNVPWHLGVDCEEYQKLNENERQREDLLVRKLAKEKKWRRCPKCRFYVEKIIGCLHITCRSAFCYKFIWSFELFSRLIHKLTVQISVLLCMWRRVECYTRRLPKKLDPMPRSDEEKIIFTCHLPFFDMFLPITGKK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1348 370 Gene3D - 242 327 - -
Alju05g1348 370 Pfam Zinc finger, C3HC4 type (RING finger) 112 157 IPR018957 GO:0046872
Alju05g1348 370 MobiDBLite consensus disorder prediction 70 97 - -
Alju05g1348 370 SMART ibrneu5 180 245 IPR002867 GO:0008270
Alju05g1348 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 190 IPR013083 -
Alju05g1348 370 FunFam RBR-type E3 ubiquitin transferase 108 193 - -
Alju05g1348 370 SUPERFAMILY RING/U-box 256 301 - -
Alju05g1348 370 SUPERFAMILY RING/U-box 110 189 - -
Alju05g1348 370 Pfam IBR domain, a half RING-finger domain 195 245 IPR002867 GO:0008270
Alju05g1348 370 ProSiteProfiles Zinc finger RING-type profile. 112 157 IPR001841 -
Alju05g1348 370 MobiDBLite consensus disorder prediction 70 102 - -
Alju05g1348 370 CDD BRcat_RBR_unk 195 248 - -
Alju05g1348 370 ProSitePatterns Zinc finger RING-type signature. 130 139 IPR017907 -
Alju05g1348 370 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 75 306 IPR031127 GO:0004842|GO:0016567
Alju05g1348 370 ProSiteProfiles TRIAD supradomain profile. 108 336 IPR044066 -
Alju05g1348 370 SUPERFAMILY RING/U-box 183 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1348 Alju-ChrAlju05 42405022 42406983 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1348 128 299 C3H Transcription Factor Family AT2G19610 27.568 1.34e-12 66.6