Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1298 ATGGGCGCGCACGCCGCTTTGCTTGTGCGCGTTCCGGCAGCAACAACATCTCGTCTTGTCCCTCTTTTGCTAGCGCTTCTTCTTCTTCTTCTCTTGTCGTCGACGCCTTCGTTGTCCTACTCCGACACGGAAGCCCTCTTGAAATTCAGAAGCTCCCTCAGCAATGTCGTCAGTCTCAGCAGCTGGGATCCCGCCATCAACCCTAAGCCACCGTGCACCGGCAATATCGCCAACTGGGTCGGCATTTTCTGCATCAACGGCACCGTTTGGGGCTTCCGTCTCGAGAACATGGGCCTCATGGGAAATATTGACGTTGAAGCTCTTGCTTCCATGCCCCGTTTAAGGTCTATTAGCTTGATGAATAATTCCTTTGCCGGACCTCTGCCGGAGATCAAGCGCATGAGGAATCTGAAGTCCCTTTATTTATCATACAACCATTTTTCCGGCGACATCCCCAACGACGCATTTGTGGGTATGAACATGTTAAAGAAAGTTTATCTGGCTAATAACCAATTCGACGGAGAAATCCCTTCCTCCCTCGGCGTCTTGCCTAGCCTCCTCGCCGTCCGGCTCGATGGCAACAAGTTTCACGGCCGAATCCCTAAGTTTCAAAATAGAACGTTGAAGCTTATTGATATGTCTAACAATGATTTGGAAGGCCCCATTCCTCAGAGTCTAGCCTCTTTCAGCGCCTTTGCTTTCTCAGGGAACGCACATTTATGTGGACGTCCTCTGGAGAATCCATGCCCTTCAATCCCTTACGCGAACATAGATTCTCCATCAAAGACAGCGATTCTCAGGATTCTTCTCGTTCTACTTCTCACAATACTAATCGTAGTGGTGATCGTTTCGGCGATCGTGATAGCCCGCCTGAGAACTCGCCGGAGATACGCGGACGAGGAATCGCTCTCGACGTACCGTAGCCAACATTCTGTGAAGTACGCTCCTTCGGCGGCGTACTCGAAGCCGAAGACAATAGGCGATCGTGAGAATACGAAGTTTCTTGCAGAACAAAACAACAATTATCAGAAAACGCCATCGATATCGAAGAAAGGAGAGGTTGGGAAGTTGATATTTTTGAGGAATCGGGAGAAGAAGTATGATTTGCAGGATTTGATGAAGGCGTCAGCAGAGGTTCTGGGGAGTGCGGCGTTTGGATCGTCGTATAAGACGGCGTTAAAGGATGATCAAGCGGTGGTGGTGAAGAGGTATAAGCAGATGAACAATGTGTCAAGAGATGAGTTCTTTGAACACATGGTAAGGATTGGTGATTTGTCTCATCCAAATCTGCTTCCTCTCGTTGCTTATTATTATCGGAAAGAAGAGAAACTCTTGCTCACTGACTTCGTTCCCAGGGGTTGCTTGGCCAGTCATCTTCATGGTAATCATAACAACGAGAGGCCTGGCTTAAGCTGGCCAACTCGTTTAAAAATTGTGAAAGGCGTAGCTAGGGGTTTGTCATATCTCTACACAGCATTACCAAGCCTCGTGGTGCCTCATGGTCATTTGAAATCTTCTAACATTTTGTTAGACGAAAATTATGAGCCTTTACTCACAGATTATGCCCTCATTCATGTCATCAATCTGGATCATGCTCAGCAGAGCATGATGCCATACAAGTCTCCGGAGTACGCACAGCTCGGCCGGATCACAAAGAAGACCGATGTGTGGAGCTTAGGCATCGTGATCTTGGAGATCCTAACAGGGAAGTTCCCGGAGAACTATCTGACTCTGAGGCACGATATCGGTTCGGACATTGCAAGCTGGGTGAACGGTATGATCACGGATAAGCGAACGAGTGAAGTGTTTGATGTTGAAATGGGAGGGGTCGAGAATAGTAAGAGTGAGTTGCTAAAGCTTTTGAAGATTGGACTGAGTTGTTGTGAGGAGAATGTGGAGAGAAGATTTGATATAAAGGAAGCTCTTGAGGAAATTGAAGAGTTGAAGGATGAGAGTGATGGAGATTTTTCTTTGACTGTCACTAGCGAACGAGATGCTTTTCAAGCTATATGA 2013 0.4744 MGAHAALLVRVPAATTSRLVPLLLALLLLLLLSSTPSLSYSDTEALLKFRSSLSNVVSLSSWDPAINPKPPCTGNIANWVGIFCINGTVWGFRLENMGLMGNIDVEALASMPRLRSISLMNNSFAGPLPEIKRMRNLKSLYLSYNHFSGDIPNDAFVGMNMLKKVYLANNQFDGEIPSSLGVLPSLLAVRLDGNKFHGRIPKFQNRTLKLIDMSNNDLEGPIPQSLASFSAFAFSGNAHLCGRPLENPCPSIPYANIDSPSKTAILRILLVLLLTILIVVVIVSAIVIARLRTRRRYADEESLSTYRSQHSVKYAPSAAYSKPKTIGDRENTKFLAEQNNNYQKTPSISKKGEVGKLIFLRNREKKYDLQDLMKASAEVLGSAAFGSSYKTALKDDQAVVVKRYKQMNNVSRDEFFEHMVRIGDLSHPNLLPLVAYYYRKEEKLLLTDFVPRGCLASHLHGNHNNERPGLSWPTRLKIVKGVARGLSYLYTALPSLVVPHGHLKSSNILLDENYEPLLTDYALIHVINLDHAQQSMMPYKSPEYAQLGRITKKTDVWSLGIVILEILTGKFPENYLTLRHDIGSDIASWVNGMITDKRTSEVFDVEMGGVENSKSELLKLLKIGLSCCEENVERRFDIKEALEEIEELKDESDGDFSLTVTSERDAFQAI 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1298 670 Pfam Leucine rich repeat 135 196 IPR001611 GO:0005515
Alju05g1298 670 Pfam Protein tyrosine and serine/threonine kinase 378 643 IPR001245 GO:0004672|GO:0006468
Alju05g1298 670 Gene3D Ribonuclease Inhibitor 41 159 IPR032675 -
Alju05g1298 670 ProSiteProfiles Leucine-rich repeat profile. 136 158 IPR001611 GO:0005515
Alju05g1298 670 Gene3D Transferase(Phosphotransferase) domain 1 450 657 - -
Alju05g1298 670 Gene3D Phosphorylase Kinase; domain 1 340 449 - -
Alju05g1298 670 SUPERFAMILY L domain-like 69 248 - -
Alju05g1298 670 Gene3D Ribonuclease Inhibitor 160 252 IPR032675 -
Alju05g1298 670 ProSiteProfiles Protein kinase domain profile. 374 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju05g1298 670 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 26 653 IPR046959 -
Alju05g1298 670 Pfam Leucine rich repeat N-terminal domain 41 84 IPR013210 -
Alju05g1298 670 SUPERFAMILY Protein kinase-like (PK-like) 378 649 IPR011009 -
Alju05g1298 670 FunFam Pollen receptor-like kinase 1 450 658 - -
Alju05g1298 670 Coils Coil 631 651 - -
Alju05g1298 670 FunFam pollen receptor-like kinase 1 343 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1298 Alju-ChrAlju05 41623429 41627272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1298 14 666 Receptor kinase-like Gene Family AT5G35390 48.571 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Alju05g1298 PK_Tyr_Ser-Thr 4.4e-27 CL0016