Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1270 ATGAGTTTTGGGGGTTTTCTCGACAATAACTGGGGTGGTGGAGGAGCTGGCGTCGGCGGCGGTGGAGGAGGAGGCGGCGGCGGAGGTGCCAGAATCGTCGCCGATATTATTCCTTACAGCAACGGTACCTCCAACGATAATAGAATGCCGTCGAGTGGTTCAATCTCACATCAGCCTCGTTTGGTCACAACAGCACCCACCACCACCATGGCCAAATCCATGTTCAATTCTCCAGGACTTTCTCTTGCACTTCAAACGAATCTTGACGAGCAACAAGGGGATGTGAATAGAATGGGTGGAGATAGCTATGAGCCAAATGTTGGGTTGAGAAGAAGTAGAGAAGAAGAACACGAAAGCAGATCTGGCAGTGATAACATGGAAGGCCCTACTTCCGGTGACGATCAGGACGCCGCCGACAACCCTCCCCGGAAAAAACGCTATCACCGACATACCCCTCAGCAAATTCAAGAGCTCGAATCTCTCTTCAAAGAGTGCCCGCACCCAGATGAGAAACAAAGACTCGAACTTAGCAGAAGACTTTCCCTGGAAACCAGACAAGTGAAATTCTGGTTCCAAAATCGAAGAACCCAGTTGAAGACCCAATTGGAGCGCCATGAGAACACTTTGCTGAGGCAAGAGAACGATAAACTGAGAGCAGAGAATATGTCTATAAGAGAAGCCATGAGGAATCCGATGTGTTCAAATTGTGGAGGGCCAGCAATTATAGGCGAGATTTCCCTCGAAGAACAACACTTGAGGATTGAAAACGCTCGATTAAAGGATGAGTTAGACCGAGTTTGTGCTCTCGCCGGAAAGTTTCTGGGCCGACCCGTTTCTTCATTAACTGGTCCCATGGGTCCTCCATTGCCCAACTCAAGCTTGGAACTCGGAGTTGGCATCAACGGGTTTGGTGGTATCAGTACTGTCCCTTCAACATTGCCTCTAGGGCCCACAGATTTCGGGATTTCCAGCCAATTAGCCATGGTCCCTCCGGCGGCAACAACGACGACTGCGATGACGAGACCACCGGGGAATTTGGTCGATAATAGGTCGATAGAGAGGTCTATGTTTCTGGAGCTGGCTTTGGCGGCCATGGATGAGCTGGTGAAGATGGTTCATACAGATGAACCTCTCTGGTTGAGAAGCTTAGAAGAAGGAGGAGGAAGAGAGATTCTGAATCATGAAGAGTATATGAGAACATTTACAAATCCTTGCATTGGAATGAGACCTAATGGCTTTGTCTCAGAAGCTTCTAGAGAAACTGGAATGGTTATCATCAACAGCTTGGCCCTTGTTGAGACCCTCATGGATTCAAATCGCTGGGCAGAAATGTTTCCTTGTTTAATTGCCAGAACCGCCACCACCGAAGTAATCTCCAGCGGAATCAATGGAACCAGAAATGGTGCTCTCCAACTGATGCATGCGGAGCTTCAGGTTCTATCGCCATTGGTGCCGGTAAGAGAGGTGAATTTTCTTAGATTCTGCAAGCAACACGCAGAGGGGGTGTGGGCTGTGGTGGATGTATCGATAGACTCGATTATTCGAGAAGCTTCTGGAACTCCATCGTTTATGAACAACTGTGGTTGTAGAAGGCTTCCTTCTGGGTGCCTTGTTCAGGATATGCCAAATGGTTACTCCAAGGTGACATGGGTTGAAGATGCAGAATACGATGAAAGTCAAGTCCACCAACTCTATAGACCCTTGTTGAGCTCCGGCATGGGCTTCGGTGCTCAACGGTGGGTCGCCACCCTGCAACGCCAATGTGAATGCCTTGCCATCTTAATGTCCTCCTCCGTCCCCTCTCGAGATCACACCGCTGCCATAACGGCCGGTGGCCGGCGGAGCATGTTGAAGCTAGCACAGCGAATGACCAACAATTTTTGTGCCGGAGTTTGCGCTTCCACCGTGCACAAGTGGAACAAGCTGAACGCCGGCAATGTCGACGAGGATGTCAGGGTGATGACTCGGAAGAGCGTGGATGATCCCGGGGAGCCTCCGGGGATAGTTTTAAGTGCAGCCACCTCGGTTTGGCTTCCGGTTTCACCCCAGAGACTGTTCGATTTCCTACGTGATGAACGTCTCAGAAGTGAATGGGACATACTCTCAAACGGTGGGCCCATGCAAGAGATGGCCCACATCGCCAAAGGCCAAGACCACGGCAATTGCGTCTCTCTCCTGCGAGCCAGTGCGATGAATGCAAACCAGAGTAGCATGCTAATACTGCAGGAGACGTGCATAGACGCGGCGGGGTCGCTTGTGGTGTACGCGCCGGTGGATATCCCGGCCATGCATGTGGTTATGAACGGCGGCGACTCGGCTTACGTGGCGTTATTGCCGTCCGGGTTTGCTATAGTCCCGGATGGACAGGGGTCGCGTGGGTCCCAAGCGCCGGCGACCAACGGGAACGCGAGCAACGGCTGCGTGAATGAGAGGGTAAGTGGGTCCCTCCTGACGGTGGCTTTTCAAATCCTCGTGAATAGCCTCCCTACAGCCAAGCTCACGGTGGAATCGGTGGAGACGGTGAACAACCTCATCTCGTGTACCGTTCAGAAAATAAAGGCCGCTCTACAATGTGAAAGCTGA 2583 0.5157 MSFGGFLDNNWGGGGAGVGGGGGGGGGGGARIVADIIPYSNGTSNDNRMPSSGSISHQPRLVTTAPTTTMAKSMFNSPGLSLALQTNLDEQQGDVNRMGGDSYEPNVGLRRSREEEHESRSGSDNMEGPTSGDDQDAADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSRRLSLETRQVKFWFQNRRTQLKTQLERHENTLLRQENDKLRAENMSIREAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPVSSLTGPMGPPLPNSSLELGVGINGFGGISTVPSTLPLGPTDFGISSQLAMVPPAATTTTAMTRPPGNLVDNRSIERSMFLELALAAMDELVKMVHTDEPLWLRSLEEGGGREILNHEEYMRTFTNPCIGMRPNGFVSEASRETGMVIINSLALVETLMDSNRWAEMFPCLIARTATTEVISSGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDSIIREASGTPSFMNNCGCRRLPSGCLVQDMPNGYSKVTWVEDAEYDESQVHQLYRPLLSSGMGFGAQRWVATLQRQCECLAILMSSSVPSRDHTAAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGQGSRGSQAPATNGNASNGCVNERVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1270 860 CDD START_ArGLABRA2_like 354 589 - -
Alju05g1270 860 FunFam Homeobox-leucine zipper protein GLABRA 2 359 589 - -
Alju05g1270 860 Pfam START domain 359 590 IPR002913 GO:0008289
Alju05g1270 860 SUPERFAMILY Bet v1-like 352 590 - -
Alju05g1270 860 SMART START_1 359 590 IPR002913 GO:0008289
Alju05g1270 860 Coils Coil 195 230 - -
Alju05g1270 860 SUPERFAMILY Homeodomain-like 128 201 IPR009057 -
Alju05g1270 860 ProSiteProfiles 'Homeobox' domain profile. 141 201 IPR001356 GO:0003677
Alju05g1270 860 SUPERFAMILY Bet v1-like 619 853 - -
Alju05g1270 860 CDD homeodomain 143 201 IPR001356 GO:0003677
Alju05g1270 860 ProSiteProfiles START domain profile. 350 593 IPR002913 GO:0008289
Alju05g1270 860 SMART HOX_1 142 205 IPR001356 GO:0003677
Alju05g1270 860 MobiDBLite consensus disorder prediction 107 123 - -
Alju05g1270 860 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 140 857 IPR042160 -
Alju05g1270 860 FunFam Homeobox-leucine zipper protein HDG1 131 217 - -
Alju05g1270 860 Pfam Homeodomain 144 199 IPR001356 GO:0003677
Alju05g1270 860 Gene3D - 130 217 - -
Alju05g1270 860 MobiDBLite consensus disorder prediction 92 151 - -
Alju05g1270 860 MobiDBLite consensus disorder prediction 40 59 - -
Alju05g1270 860 ProSitePatterns 'Homeobox' domain signature. 176 199 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1270 Alju-ChrAlju05 40664185 40670338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1270 1 860 Homeobox Transcription Factor Family AT3G61150 62.655 0.0 1048
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju05g1270 START 1.8e-52 CL0209