LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju05g1244	ATGGCAGGATCTGAATCAAACAGACCCATCACAAAGATCAAAAGGTTCATAGGGGTCAGACAAAGGCCTTCAGGAAGGTGGGTGGCTGAGATCAAAGACTCATCTCAACACGTGAGACTATGGCTCGGAACCTATGACACCCCGGAGGAAGCGGCTCAGGCTTACGACGAGGCGGCTCGGACCCTGCGAGGCGAAAACGCCCGAACCAACTTCGCACCACCGGCTAGCCAATCAGCCACAGGCGAGTCTGAGCCCAAAGCAAAGCATGGGCAAAATTTTGCTACTTTGAAAGCTAAGCTGAGCAAGAATCTTCAGAGTATAATGACCAGATCAGGAAGTAGTGAAACGACGTCGTCCAAGAGTAGGGTAAGTGACCATATCACTTTTGCTAGCATATTTCATCCCAGGAGGAGTTTCCTACCTTACCAGATCTCTTCATCATCACTTGATTCAATGAAGAACATGGAGATTATGGTGCAGCCTAGTATTATAGTACCTCCAGCTGAAGAAACTGATAAACATCAGCCTTCTTCTTGGGAAAATTCCAGTGTCTCTGATGATTGTGGATATTCCGATCATTGGATCGGGCTCCAGCAAACAGTGATGGCGGAATCCACCATGTCAGACGGGTCGGATGCCGGGGAGGTTAGTACTGTAGGGGATCAAGGGCTCATGGAGCAAGTGTTGGGGTGGATCAATAATAGCCCTGAGGAGGGTTCAAGGACTAAGAGGCTTAAGGTATCTTCTTCAGTATTTGTGCCTCCAACTTTTAGTGGGTCTCGAAGTAATAGTAGTTGTTGCTCTCCTTATTATGGTTATGATTCTCCGCATGTATGA	837	0.4779	MAGSESNRPITKIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAAQAYDEAARTLRGENARTNFAPPASQSATGESEPKAKHGQNFATLKAKLSKNLQSIMTRSGSSETTSSKSRVSDHITFASIFHPRRSFLPYQISSSSLDSMKNMEIMVQPSIIVPPAEETDKHQPSSWENSSVSDDCGYSDHWIGLQQTVMAESTMSDGSDAGEVSTVGDQGLMEQVLGWINNSPEEGSRTKRLKVSSSVFVPPTFSGSRSNSSCCSPYYGYDSPHV	278

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju05g1244	278	MobiDBLite	consensus disorder prediction	66	89	-	-
	Alju05g1244	278	CDD	AP2	14	72	IPR001471	GO:0003700\|GO:0006355
	Alju05g1244	278	ProSiteProfiles	AP2/ERF domain profile.	15	72	IPR001471	GO:0003700\|GO:0006355
	Alju05g1244	278	SMART	rav1_2	15	78	IPR001471	GO:0003700\|GO:0006355
	Alju05g1244	278	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	14	167	-	-
	Alju05g1244	278	PRINTS	Ethylene responsive element binding protein signature	16	27	IPR001471	GO:0003700\|GO:0006355
	Alju05g1244	278	PRINTS	Ethylene responsive element binding protein signature	38	54	IPR001471	GO:0003700\|GO:0006355
	Alju05g1244	278	Pfam	AP2 domain	15	64	IPR001471	GO:0003700\|GO:0006355
	Alju05g1244	278	SUPERFAMILY	DNA-binding domain	15	72	IPR016177	GO:0003677
	Alju05g1244	278	MobiDBLite	consensus disorder prediction	70	85	-	-
	Alju05g1244	278	FunFam	ethylene-responsive transcription factor RAP2-11	14	73	-	-
	Alju05g1244	278	Gene3D	AP2/ERF domain	14	73	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju05g1244	Alju-ChrAlju05	39955275	39956111	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju05g1244	15	72	AP2-EREBP Transcription Factor Family	AT5G19790	72.414	1.48e-25	100

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju05g1244		AP2	3.9e-15	CL0081