Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1212 ATGTGTCATCAACTTCCTTTACTTGAAGGCCTTGCAGTTGACGGTTTTATACCCAAGGATATAGGCAATCTTGTTAAACTTGAAGTTTTAGTTCTAGGAAATTTGAGTGGACCTATTCCTTCCAATATATTCAATATTTCAACATTGATACGCCTGTACCTTCAAGATATTTCTTCCTCTGGCCTTCTTCCATCATATTTAGGAATTGGCCTTCCCAACTTGAAAGAATTAGTTTTGGTGCAAAATGAACTTACTGGAAACATTCCAAATACAATATCAAATGCTTCACAACTCACTATAATAGATTTATCTATCAATAAATTCAGCGGAGCTATACCCAATGTCCTCGGAAATTTAACAAAGTTGATGACATTAAATTTGCTTGGGAATGATTTGACTGGGGTGATACCGGATACAATTAACAAATTACATAGTCTTCAAGGCTTAATCCTCAGTGACAACAGATTGCAGGGCTCCATTATAAATGAACTTTGCCAACTCAAAAGTCTAAGTGAGTTGAATCTTGCCAACAACATGTTTTTGGGAGTGGTTCCAGAATGTCTTGGGAATACTTCTTTGCGAAAGTTGAATTTCAGTTCTAATAAATTGATTTCTCATATACCAAATTCTCTTTGGAGTTTCAAAGATATCTTGGTTTTAGATATATCCTCAAATGCACTTAGTGGAATAATTTCACCAGAGGTGTCGAACTTGAGAGCAATCATACTATTGAACTTATCAAGAAATCAAATTTCAGGAAGCATCCCAACTACCATTGGTGGCTTGCAAACTTTGCAAACCTTATCTCTGGCTATAAACAAATTACAAGGGCCTATTCCTGAATCACTTAGCAGCATGATAAGCATGGAGTCCTTGGATCTTTCCCATAATTATTTGTCTGGTGTGATTCCAAAGTCCTTAGAGTCATTACTCCATCTTAAATACATTAACCTTTCCTACAATTCATTGCATGGAGAAATTCCAAATGGCGGCCCTTTTCAAAATTTTACTGCTGGATCCTTTATGATGAATAAAGATCTTTGCGGGAAATCCCAATTACAAGTCCAACCATGTAGGAAAGGAAACAAGCACATATCAAATAAAGTGATGTTGATTATAAAATGCTCATTGCCTATCACAGCTGCCATTTTGGTTGTTTTGGGCATTGTCTTTCTAAAGTATAAGAGAGATTATGATAATTATTCAATCCAAAGGAATTTAGTCAATTTGGATGCACCGACTAGGATATCCTATTATGAGCTTCTAAAGGGAACAAATGGATTTGACAACAGCAATCTTCTTGGCACTGGAAGTTTTGGATCAGTATACAAAGCAATCCTTCCAAATGAAAAGATAGTTGCTGTCAAAGTATTTAACTCAGACATGGAAGAAGCATTAAGAAGTTTTGATACTGAATGTGCAGCCATGTGCAATTTACGCCATCGCAATCTCACTAAGATCATAAGTAGTTGCTCAAATGATCATTTCAAATCTCTAATAATGGAATTCATGGTGAATGGGAGCCTTCATAGATGGTTGTACTCTCATAACTATTGTTTAGATGTTTTGCAAAGGTTGAACATAATGATTGATGTGGCAACAGCTTTAGAGTATCTTCATCATGGTTCATCTACACTAGTTGTTCACTGTGATGTGAAGCCAAGCAATGTTTTGTTGGATGAAGATATGGTGGCTCATCTTAGTGATTTTGGTATTGCTAAACTGTTTGGTGAAGGACAACGGGAAATTTATACCAAAACTTTGGCCACGATTGGTTATATGGCACCAGAGTACGGATCAAAAGGAGTTGTTTCCGCCAAAGGAGATGTGTATAGCTATGGCATTTTGCTAATGGAAATATTCACGAGGAAGAAACCAACAGATGAGATGTTTGTTCAAGGATTAAGATTGAAAGATTGGGTGAGCGAATCCACACCACATTCAATCACTAATATTATAGATGTCAATTTGTTGCATAGAGAAAATCAAAATACTGATAATATATTACCTTATATATCATCAGTTTTTGAGTTAGCATTAAACTGTTGCATTGACTTACCTGAGACACGACTTACTATGACTGATGTTGTAGTATCGTTGAAAAAAATCAAGGCTTTGTTCATGATAAATGTTAGGAACACTACTAATTGA 2151 0.357 MCHQLPLLEGLAVDGFIPKDIGNLVKLEVLVLGNLSGPIPSNIFNISTLIRLYLQDISSSGLLPSYLGIGLPNLKELVLVQNELTGNIPNTISNASQLTIIDLSINKFSGAIPNVLGNLTKLMTLNLLGNDLTGVIPDTINKLHSLQGLILSDNRLQGSIINELCQLKSLSELNLANNMFLGVVPECLGNTSLRKLNFSSNKLISHIPNSLWSFKDILVLDISSNALSGIISPEVSNLRAIILLNLSRNQISGSIPTTIGGLQTLQTLSLAINKLQGPIPESLSSMISMESLDLSHNYLSGVIPKSLESLLHLKYINLSYNSLHGEIPNGGPFQNFTAGSFMMNKDLCGKSQLQVQPCRKGNKHISNKVMLIIKCSLPITAAILVVLGIVFLKYKRDYDNYSIQRNLVNLDAPTRISYYELLKGTNGFDNSNLLGTGSFGSVYKAILPNEKIVAVKVFNSDMEEALRSFDTECAAMCNLRHRNLTKIISSCSNDHFKSLIMEFMVNGSLHRWLYSHNYCLDVLQRLNIMIDVATALEYLHHGSSTLVVHCDVKPSNVLLDEDMVAHLSDFGIAKLFGEGQREIYTKTLATIGYMAPEYGSKGVVSAKGDVYSYGILLMEIFTRKKPTDEMFVQGLRLKDWVSESTPHSITNIIDVNLLHRENQNTDNILPYISSVFELALNCCIDLPETRLTMTDVVVSLKKIKALFMINVRNTTN 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1212 716 SMART serkin_6 428 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju05g1212 716 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 70 362 - -
Alju05g1212 716 Gene3D Phosphorylase Kinase; domain 1 410 503 - -
Alju05g1212 716 SUPERFAMILY L domain-like 96 350 - -
Alju05g1212 716 Gene3D Transferase(Phosphotransferase) domain 1 504 713 - -
Alju05g1212 716 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 504 713 - -
Alju05g1212 716 Pfam Leucine Rich Repeat 192 213 IPR001611 GO:0005515
Alju05g1212 716 ProSiteProfiles Protein kinase domain profile. 428 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju05g1212 716 ProSitePatterns Protein kinases ATP-binding region signature. 434 456 IPR017441 GO:0005524
Alju05g1212 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672|GO:0006468
Alju05g1212 716 SUPERFAMILY RNI-like 16 132 - -
Alju05g1212 716 SMART LRR_typ_2 286 309 IPR003591 -
Alju05g1212 716 SMART LRR_typ_2 119 142 IPR003591 -
Alju05g1212 716 SMART LRR_typ_2 310 334 IPR003591 -
Alju05g1212 716 SMART LRR_typ_2 71 95 IPR003591 -
Alju05g1212 716 SMART LRR_typ_2 167 190 IPR003591 -
Alju05g1212 716 SMART LRR_typ_2 238 262 IPR003591 -
Alju05g1212 716 SMART LRR_typ_2 191 214 IPR003591 -
Alju05g1212 716 Pfam Protein kinase domain 430 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju05g1212 716 SUPERFAMILY Protein kinase-like (PK-like) 403 700 IPR011009 -
Alju05g1212 716 Pfam Leucine rich repeat 264 323 IPR001611 GO:0005515
Alju05g1212 716 Pfam Leucine rich repeat 121 179 IPR001611 GO:0005515
Alju05g1212 716 Gene3D Ribonuclease Inhibitor 4 360 IPR032675 -
Alju05g1212 716 PANTHER OS04G0122200 PROTEIN 10 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1212 Alju-ChrAlju05 38678540 38681833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1212 35 714 Receptor kinase-like Gene Family AT3G47570 38.243 1.34e-140 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Alju05g1212 Pkinase 6.7e-46 CL0016