Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1196 ATGGTGAGAGGGAAGGTAGAGATGAAGCGTATAGAGAACAAAACAAACAGGCAAGTGACATACTCAAAGAGGCGTAATGGACTCTTGAAGAAGGCTTTTGAGCTCTCAGTTCTGTGTGATGTTGAGGTTGCTCTCATCGTCTTCTCTGCCAGAGGCAAACTCCATGAATTTTCAAGCTCCAGCTTGAAGGAGACAATTGACCGTTATCACACATATGTTAAAGATACTCATGTCTCCCAACAAAATATGCAGCATCTGAATCAAGAAACAGCAAGTATGAAGAAGAAGATTGAGCTTCTTGAAGCTTCAAAACGGAAACTTACAGGAGAAGGTTTGAACACATATTCCCTACAAGAGCTCGAAGAAATTGAACAAGAGGTGCTAAAGAGTGTCAGAAACGTTCGAGCAAGAAAGAATCAAATCATTAAGGAGCAAATGGAGAAACTAGAAGAGAAGGAAAAAACCCTAACAGAAGAATATGCAAGGCTTTCTGAGAAGGTGAGATTGTAG 510 0.4059 MVRGKVEMKRIENKTNRQVTYSKRRNGLLKKAFELSVLCDVEVALIVFSARGKLHEFSSSSLKETIDRYHTYVKDTHVSQQNMQHLNQETASMKKKIELLEASKRKLTGEGLNTYSLQELEEIEQEVLKSVRNVRARKNQIIKEQMEKLEEKEKTLTEEYARLSEKVRL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1196 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju05g1196 169 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju05g1196 169 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Alju05g1196 169 Coils Coil 83 103 - -
Alju05g1196 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju05g1196 169 Pfam K-box region 79 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju05g1196 169 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Alju05g1196 169 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Alju05g1196 169 ProSiteProfiles K-box domain profile. 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju05g1196 169 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Alju05g1196 169 Coils Coil 117 166 - -
Alju05g1196 169 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Alju05g1196 169 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju05g1196 169 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju05g1196 169 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju05g1196 169 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1196 Alju-ChrAlju05 38367992 38372981 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1196 1 154 MADS-box Gene Family AT2G45660 64.557 1.12e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju05g1196 K-box 1.2e-21 No_clan