Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1194 ATGGTGAGAGGGAAGACACAGATGAAGCGTATAGAGAACGCAACGAGCAGGCAAGTGACATTCTCAAAGAGACGTAATGGACTCTTAAAGAAAGCTTTTGAGCTCTCAGTTCTGTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTCCCAGAGGCAAGCTTTATGAATTTGCAAGCTCCAGCATGCAGGCAACAATTGAACGTTACCGCAATCATAACAAAGATGCTCAAACAGCCGCCAGATTTGTAGAACAAAATATGCAGCATCTAAAGCAAGAAACAGAAACTATGAAGAAGAAGATTGAGCAGCTTGAAATTTCAAAACGGAAGCTCTTGGGAGAAGATTCTGGCTCTTGCTCCGTACAAGAACTAGAAGAGATAGAACAGCAATTGGAAAGCAGTGCAAGAAAAGTTCGTGAGAGGAAGAGTCAAGTTTATAACGAACAAATGGAGCAACTAATAGAAAAGGGAAAAACGCTAGCAGCAGAAAATGCAAGGCTGTCGGAGAAGTATAATAGCTTGGCAAAGCTAGCAAGAGAGAAGAATGATGGTGAAAATGCAGCCTCCTTAGAAAATAGTCCAACTTCAGAAGTAGAAACTGACTTGTTCATTGGATTACCAGAAACAAGAGGCATCACTCTTCCCCTTCATGTGCTCTGA 660 0.4212 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQATIERYRNHNKDAQTAARFVEQNMQHLKQETETMKKKIEQLEISKRKLLGEDSGSCSVQELEEIEQQLESSARKVRERKSQVYNEQMEQLIEKGKTLAAENARLSEKYNSLAKLAREKNDGENAASLENSPTSEVETDLFIGLPETRGITLPLHVL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1194 219 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju05g1194 219 Coils Coil 66 114 - -
Alju05g1194 219 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Alju05g1194 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju05g1194 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju05g1194 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju05g1194 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju05g1194 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju05g1194 219 Coils Coil 121 144 - -
Alju05g1194 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju05g1194 219 FunFam MADS-box protein SOC1 14 95 - -
Alju05g1194 219 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju05g1194 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 172 - -
Alju05g1194 219 Coils Coil 150 170 - -
Alju05g1194 219 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Alju05g1194 219 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Alju05g1194 219 Gene3D - 14 103 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1194 Alju-ChrAlju05 38229752 38245172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1194 1 158 MADS-box Gene Family AT2G45660 72.785 1.15e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju05g1194 K-box 1.3e-23 No_clan