Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1193 ATGGTGAGAGGGAAGATAGAGATGAAGCGTATAGAGAACGCGACCAACAGACAAGTAACATTCTCGAAGAGACGTAATGGACTCTTAAAGAAGGCTTTTGAGCTCTCAGTTCTGTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTCCCAGAGGCAAGCTCTATGAATTCTCAAGCTCCAGGTTGCAGGAGACAATTGAACGATATCGTAGTTATACTAGAGATGCTGAGACAGCCACCAGATACATGGAACAAAACATGCAGCTTTTAAAGGAAGAAACAGAAAGTATGATGGAGAAGGTTGAACATCTTGAAGATACAAAACGGAGACTCTTGGGAGAAGGATTAGGCTCATGCTCACTAGCAGAACTAGAAGAGTTACAACAGCAGTTGCTAAAGAGTGTAACTATCGTCCGAGAAAGAAAGAATCGGGCTTATAGAGAACACGTGGAGCGAATAAAAGAAAGGGAACAAACCCTAACAGCAGAAAACTCAAGGCTCTGTGAAGAGTATGGTATCATGCTTGATACGACAGAGAATACAAGTGAAAATCCAACCTCCTCAGAAAGTAGTCCAACTTTAGATGTGGAAACTGACTTGTTCATTGGACTCCCAGAAGCAAGAACAAGAAACAATATTATTACTCATAATAATCCTGAGATTCCCCTTTATGTGCCACAGCTTGATGTGGTTGATCACTTGAGTCTTCTACAGCTACCGCATTCAGAAGTGGTTGTGATGCCGCTTGAGACCGAGACCTATCATCAATTTTTACTCTTTCTTGAGTAG 789 0.4208 MVRGKIEMKRIENATNRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSRLQETIERYRSYTRDAETATRYMEQNMQLLKEETESMMEKVEHLEDTKRRLLGEGLGSCSLAELEELQQQLLKSVTIVRERKNRAYREHVERIKEREQTLTAENSRLCEEYGIMLDTTENTSENPTSSESSPTLDVETDLFIGLPEARTRNNIITHNNPEIPLYVPQLDVVDHLSLLQLPHSEVVVMPLETETYHQFLLFLE 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1193 262 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju05g1193 262 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Alju05g1193 262 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 187 - -
Alju05g1193 262 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Alju05g1193 262 Coils Coil 143 170 - -
Alju05g1193 262 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju05g1193 262 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Alju05g1193 262 Coils Coil 87 107 - -
Alju05g1193 262 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Alju05g1193 262 Coils Coil 261 262 - -
Alju05g1193 262 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju05g1193 262 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju05g1193 262 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju05g1193 262 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju05g1193 262 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju05g1193 262 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Alju05g1193 262 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1193 Alju-ChrAlju05 38204824 38211779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1193 1 156 MADS-box Gene Family AT2G45660 62.821 1.51e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju05g1193 K-box 2.1e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju05g1193 05 38204824 38211779 Alju05g1193 05 38204824 38211779 ECH