Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1109 ATGATGGAAGTGGTACTTCGTTCACCAAGTACGTTTCTTCTTCTACTTCTTCTTCCCTTTCTGCTTTCCTCTTATTGTGCCTATGGCTACTCAGTAAATGAAGTCAAATCATGGTGTAGCCAAACCCCTAACCCTAAACCATGTGAGTACTTCTTGTGCTCCAAAACTTACAACAAACCGATAAAGCAAAAATCAGATTTCTTCAAGGTTTCAGTTGACCTTGCCCTTGATAGAGCTCGAATGAGTCTAAATAAGACTCTCTCGCTTGGCCCTAAGTGTAGAAACGCACGTGAGAAAGCTGCTTGGGACGATTGCCTTGAGCTTTATGAGCAAACCATAAGCAGGCTCTCAAAAACTGTTTACGCCAAATGCACCAAAGTTGATGCTCAGACATGGCTCAGCACGGCTCTGACCAACCTCGAAACTTGCATGTTCGGGTTTTATGACCTCGGAGTTACAGACTATGTGCTGCCATTGATGTCCAACAACGTTACCCAGTTGCTAAGCAATGCCTTGTCTCTTAACAAGGCTCCATCATCGAACGCTGCTACGTCGAGTTTTTCCAGAGGTGGCTTACCGGCCTGGGTTAAGCCGGGTGACCGGAAGCTGTTGCAAGCTTCTTCGCCGGCTTCTCAGGCGAATGTCGTGGTGGCTAAAGACGGTTCGGGGAAGTATACGACCTTGAAGGAGGCAATAGATGCTGCGCCGAAGATTAACACGGGAAGGTATATCATATATGTGAAGGCGGGAGTCTATAATGAACAAGTTGAGGTAACAAAAAATAATATTATGTTGGTGGGAGATGGTATTGGAAAAACTATAATCACAGGTAGCAAAAGTGTTGGAGGAGGCACCACAACCTTCCGTTCTGCTACTGTTGGTGAGTAA 888 0.4561 MMEVVLRSPSTFLLLLLLPFLLSSYCAYGYSVNEVKSWCSQTPNPKPCEYFLCSKTYNKPIKQKSDFFKVSVDLALDRARMSLNKTLSLGPKCRNAREKAAWDDCLELYEQTISRLSKTVYAKCTKVDAQTWLSTALTNLETCMFGFYDLGVTDYVLPLMSNNVTQLLSNALSLNKAPSSNAATSSFSRGGLPAWVKPGDRKLLQASSPASQANVVVAKDGSGKYTTLKEAIDAAPKINTGRYIIYVKAGVYNEQVEVTKNNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVGE 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1109 295 SMART PMEI_2 30 174 IPR006501 GO:0004857
Alju05g1109 295 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 177 IPR035513 -
Alju05g1109 295 Pfam Pectinesterase 214 294 IPR000070 GO:0030599|GO:0042545
Alju05g1109 295 Gene3D - 209 294 IPR012334 -
Alju05g1109 295 NCBIfam pectinesterase inhibitor domain 12 176 IPR006501 GO:0004857
Alju05g1109 295 ProSitePatterns Pectinesterase signature 1. 239 258 IPR018040 -
Alju05g1109 295 SUPERFAMILY Pectin lyase-like 208 293 IPR011050 -
Alju05g1109 295 Pfam Plant invertase/pectin methylesterase inhibitor 34 174 IPR006501 GO:0004857
Alju05g1109 295 PANTHER PECTINESTERASE 21 293 - -
Alju05g1109 295 CDD PMEI-like_3 37 180 - -
Alju05g1109 295 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 177 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1109 Alju-ChrAlju05 33647213 33648100 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1109 12 293 Carbohydrate Esterase AT2G45220 58.451 5.41e-116 342