Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1098 ATGTCCGCCTCATCCCCTGCCTCCTTTTCACCGGACCAGCACCTCCTCTCTTCCTCCGACCAGCTCTGCTATGTCCATTGCGACTTCTGTGACACTGTCCTCGCGGTGAGTGTTCCTTGCACCAGTTTGTTCAAGACTGTCACTGTACGATGTGGCCATTGCACCAACCTTCTCTCTGTCAATATGCGCGGCCTGCTCCTTCCTTCTGCCAACCAGCTTCATCTTGGACACACCTTCTTCACTCCCCAAAATCTTCTGGGGGATATTCGAAGTGCACCTTCACCAAATATGGTGATGAATCAGCTACAGAATAACCCAAATGATTCTGCTATGACTATGAGTGCCATGCGGGCACGACCTGAGGAAATCCCTAAGCCTCCACCGGCTATCAGACCTCCAGAAAAGAGACAGAGAGTTCCATCTGCTTACAATCGCTTCATCAAGGACGAGATCCAACGTATCAAAGCTGGGAATCCTGATATAAGCCACAGAGAGGCTTTCAGTGCTGCTGCCAAAAATTGGGCCCACTTCCCACATATCCACTTCGGACTGATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTCCGCCAGGAAGGAGAGGACGTGCTTATGAAGGATGGGTTTTTCGCTCCAGCAAACGTAGGGGTCTCCCCATTTTAG 663 0.5083 MSASSPASFSPDQHLLSSSDQLCYVHCDFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPSANQLHLGHTFFTPQNLLGDIRSAPSPNMVMNQLQNNPNDSAMTMSAMRARPEEIPKPPPAIRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEGEDVLMKDGFFAPANVGVSPF 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1098 220 Pfam YABBY protein 18 184 IPR006780 GO:0007275
Alju05g1098 220 CDD HMG-box_SF 138 174 - -
Alju05g1098 220 PANTHER PROTEIN YABBY 6-RELATED 5 196 IPR006780 GO:0007275
Alju05g1098 220 SUPERFAMILY HMG-box 128 178 IPR036910 -
Alju05g1098 220 Gene3D High mobility group box domain 123 180 IPR036910 -
Alju05g1098 220 FunFam Axial regulator YABBY 129 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1098 Alju-ChrAlju05 32974054 32977256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1098 29 218 C2C2-YABBY Transcription Factor Family AT4G00180 61.611 1.03e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Alju05g1098 YABBY 6.2e-73 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju05g1098 05 32974054 32977256 Alju05g1098 05 32974054 32977256 ECH