Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju05g1063 | ATGACGACTCGGATAGCGCCTGGTGTGGGAGCAAACTTGCTGGGTCAACATGCCGCAGAGAGGAATCAAGATGCTACTGCTTATGTTGGCAATCTCGATCCCCAGGTACCTGAGGAGTTATTATGGGAGCTATTTGTTCAGGCAGGTCCAGTTGTTAATGTCTATGTTCCCAGAGACAGAGTGACTAACCAACATCAAGGTTATGGTTTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTTCTTAATATGATTAAGCTTTATGGAAAACCAATACGTGTAAATAAGGCTACCCAAGACAAAAAGAGCTTGGATGTAGGAGCAAACCTTTTTATTGGAAACCTTGATCCCGATGTGGATGAGAAACTCTTGCATGATACATTCAGTGCCTTTGGAGTAATTGTTACAAACCCCAAGATCATGAGAGATCCCGAGACAGGAAATTCCCGAGGATTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGGCAATATCTTTGCAATCGTCAAATAACAGTGTCTTATGCATACAAGAAAGATACGAAAGGCGAAAGGCATGGCACTCCAGCAGAAAGAGTTCTGGCTGCCAGCAATCCAGGTGCCCAGAAGAACAGGCCTCACACTTTGTTTGCCAGTGGTCCTCCGACACTTCCCAATGTTACCCAGGCTAACGGTGCCATTGCTGCTCCGGTGCCTCCTCGTCCCTATGCTAATGGAGTTGCTCTCCCTGCTATTTCTGCCCTCCGACCGCCACCTCCTCCTCAAGCTGCCCCATTTCCACTGATGCCGGTAGCCCCTCAACCAGCATGGCATCAGCAGCAGCCGGGTCAGACAATTCCACCGCCTATGATGCCTCCGCCTCCTGTCCAGCAGTTCAGGCCACCTCACCCGAGTATGCCTCCCCCTCCACCTCCGCAAGCGGTGCCAGCTCCCCCAAGGCCTCTTCCACCACCAGCTGCAATGACAGGTCAACAACCTGTTTGGCGGCCACTGCCACCCCCTCCACCACATCAACAGGGTGTGCGGCCCCCTTCATTTCCTCAATCCATGCCTCCGCCACCTCCTCCAAGTTGA | 1113 | 0.5076 | MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQVPEELLWELFVQAGPVVNVYVPRDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKATQDKKSLDVGANLFIGNLDPDVDEKLLHDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPGAQKNRPHTLFASGPPTLPNVTQANGAIAAPVPPRPYANGVALPAISALRPPPPPQAAPFPLMPVAPQPAWHQQQPGQTIPPPMMPPPPVQQFRPPHPSMPPPPPPQAVPAPPRPLPPPAAMTGQQPVWRPLPPPPPHQQGVRPPSFPQSMPPPPPPS | 370 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju05g1063 | 370 | CDD | RRM1_SF3B4 | 28 | 100 | IPR034158 | - | |
| Alju05g1063 | 370 | MobiDBLite | consensus disorder prediction | 264 | 370 | - | - | |
| Alju05g1063 | 370 | SUPERFAMILY | RNA-binding domain, RBD | 25 | 195 | IPR035979 | GO:0003676 | |
| Alju05g1063 | 370 | CDD | RRM2_SF3B4 | 111 | 193 | IPR034159 | - | |
| Alju05g1063 | 370 | MobiDBLite | consensus disorder prediction | 291 | 370 | - | - | |
| Alju05g1063 | 370 | Gene3D | - | 16 | 106 | IPR012677 | - | |
| Alju05g1063 | 370 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 28 | 97 | IPR000504 | GO:0003723 | |
| Alju05g1063 | 370 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 184 | IPR000504 | GO:0003723 | |
| Alju05g1063 | 370 | PANTHER | SPLICING FACTOR 3B SUBUNIT 4 | 14 | 366 | - | - | |
| Alju05g1063 | 370 | SMART | rrm1_1 | 26 | 99 | IPR000504 | GO:0003723 | |
| Alju05g1063 | 370 | SMART | rrm1_1 | 113 | 187 | IPR000504 | GO:0003723 | |
| Alju05g1063 | 370 | MobiDBLite | consensus disorder prediction | 264 | 278 | - | - | |
| Alju05g1063 | 370 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 25 | 103 | IPR000504 | GO:0003723 | |
| Alju05g1063 | 370 | FunFam | splicing factor 3B subunit 4 | 109 | 200 | - | - | |
| Alju05g1063 | 370 | FunFam | Splicing factor 3b subunit 4 | 16 | 108 | - | - | |
| Alju05g1063 | 370 | Gene3D | - | 107 | 204 | IPR012677 | - | |
| Alju05g1063 | 370 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 191 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju05g1063 | Alju-ChrAlju05 | 26242767 | 26246824 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju05g1063 | 16 | 98 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 36.145 | 4.04e-06 | 47.0 |