Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1053 ATGGCTTTGACCATCGATCAGCAACAATCAAACTTAAAGCATTTCTGTAAGATCTGCAAGAAAGGTTTCGGGTGTGGGAGAGCGCTCGGTGGACACATGAGAGCGCATGGCATCGGGGACGAGAGCTGGAACCTCGATGACGATGAGGATGCCGCGAGTGACTGGGAAGAAAAGTATGGCGGAGGCGGTGACGGAAATGAGCCGCCGAACACAAAGCGTACATATGCTCTAAGAACAAACCCTAAAAAGAGTTGTAGGGTATCTGAACATGGAAAGTGCACTTCCGATGAACACGTGGAGTCGTCGCCGGTTTCTTCCCGGATGTCCGATGGTGATGACGACGGTGATGGCGAGAGAGGTTGCGGTTGGTCTAAACGGAAGAGATCGTTCAGAGCAAAAGTTAGTACGTTCAATTCTACATGTCTTTCAAATGAAGAAGAAGACATGGCCGCCAACTGTCTCATGATGTTATCAAACTCCAATGTCGGTCATCTGGCCATCACGGCCGCAGCCGCTGAGCCGGAGGAATCTAGTGCATCGGCGTGCAGAGATGAGGAGAGAAGAAATCACATAAGCTTCATCCCACCAATATCTTATTGTGTTCCTGCCGTAGTGGATCACAAAGCCAAAAGTACGGCGGTTCCTAAAGGCTTGTTTGAATGCAAAGCTTGCAAGAAAATCTTCAATTCTCATCAAGCATTAGGTGGCCATAGAGCAAGCCACAAAAAAGTTAAAGGCTGCTTCGCCTCCAGACTCGACAACCTCGAAGATAAAGACGATGATGTCATAACTCATGACGAGTTTCTCTCCACAAAATCTAACTCAATGGCTCATCAAGATCATCATCAAAACAATGCCACCTTATTAATGGCATCCTCCTCGTCCAAAAGAAAATCCAAAGTTCATGAATGTTCTATATGTCACCGGACTTTCTCGTCGGGACAAGCCCTAGGAGGACACAAGAGGTGTCATTGGATCACACCAAACGCACCAGATTCGTCCACACTGGCAAGGTTTCAGCAGTTTCAAGACCACATAGAGCGAATGAATCAGATTCCCAAGTTTGATAACTCGGAGCCACTCGATCTAAAGCTCGATCTCAACCTTCCGGCCCCGGCCGATGATTCGGCGCGGTGGAACTTGGCCACAGAAATTTTCTTACAGCCATGGGTAGGAGGGACCACGAAGACAAAGGAGAAGGATCAAAGTAGTAATATTAACAATAATAACACTTATAGTCAATGTCACAGCCCCAGCAACCGCGAATTACCCCACCATGAAACTGAAAACGACAAAAACGAAGAAGACAAAAGTAATAACAATCACAGAACTGTGTCGAGGGAAAATGTTGAAGATGAAGCTGATAGTAAAGTGAAGAAGTTAGCCAAACTAAGTGAGCTAAAGGACATGAACATGGGAGGGAGTTCTTCCCCATGGTTGCAGGTGGGGATTGGTTCAACCACTGGTGTGGGAGCTGAACCATAA 1485 0.4687 MALTIDQQQSNLKHFCKICKKGFGCGRALGGHMRAHGIGDESWNLDDDEDAASDWEEKYGGGGDGNEPPNTKRTYALRTNPKKSCRVSEHGKCTSDEHVESSPVSSRMSDGDDDGDGERGCGWSKRKRSFRAKVSTFNSTCLSNEEEDMAANCLMMLSNSNVGHLAITAAAAEPEESSASACRDEERRNHISFIPPISYCVPAVVDHKAKSTAVPKGLFECKACKKIFNSHQALGGHRASHKKVKGCFASRLDNLEDKDDDVITHDEFLSTKSNSMAHQDHHQNNATLLMASSSSKRKSKVHECSICHRTFSSGQALGGHKRCHWITPNAPDSSTLARFQQFQDHIERMNQIPKFDNSEPLDLKLDLNLPAPADDSARWNLATEIFLQPWVGGTTKTKEKDQSSNINNNNTYSQCHSPSNRELPHHETENDKNEEDKSNNNHRTVSRENVEDEADSKVKKLAKLSELKDMNMGGSSSPWLQVGIGSTTGVGAEP 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1053 494 Coils Coil 447 467 - -
Alju05g1053 494 ProSitePatterns Zinc finger C2H2 type domain signature. 304 324 IPR013087 -
Alju05g1053 494 SUPERFAMILY beta-beta-alpha zinc fingers 299 325 IPR036236 -
Alju05g1053 494 MobiDBLite consensus disorder prediction 107 122 - -
Alju05g1053 494 MobiDBLite consensus disorder prediction 81 122 - -
Alju05g1053 494 MobiDBLite consensus disorder prediction 53 72 - -
Alju05g1053 494 SMART c2h2final6 302 324 IPR013087 -
Alju05g1053 494 SMART c2h2final6 219 241 IPR013087 -
Alju05g1053 494 SMART c2h2final6 14 36 IPR013087 -
Alju05g1053 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 302 324 IPR013087 -
Alju05g1053 494 PANTHER OS02G0659100 PROTEIN 6 488 - -
Alju05g1053 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 246 IPR013087 -
Alju05g1053 494 MobiDBLite consensus disorder prediction 420 466 - -
Alju05g1053 494 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Alju05g1053 494 MobiDBLite consensus disorder prediction 395 494 - -
Alju05g1053 494 Pfam C2H2-type zinc finger 14 36 - -
Alju05g1053 494 Pfam C2H2-type zinc finger 219 243 - -
Alju05g1053 494 Pfam C2H2-type zinc finger 301 326 - -
Alju05g1053 494 ProSitePatterns Zinc finger C2H2 type domain signature. 16 36 IPR013087 -
Alju05g1053 494 MobiDBLite consensus disorder prediction 83 97 - -
Alju05g1053 494 SUPERFAMILY beta-beta-alpha zinc fingers 14 241 IPR036236 -
Alju05g1053 494 MobiDBLite consensus disorder prediction 395 419 - -
Alju05g1053 494 MobiDBLite consensus disorder prediction 470 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1053 Alju-ChrAlju05 25422190 25423674 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1053 113 369 C2H2 Transcription Factor Family AT1G02040 36.047 1.21e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju05g1053 zf-C2H2_6 2.2e-12 CL0361