Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1051 ATGGAGAAGCACAAGTGCAAGCTCTGCTTTAGAAACTTCTCTAATGGCAGAGCTTTGGGAGGTCATATGAGATCTCACATGGTGAACCTTCCTGTTCCTCCAAAACCAGAGCCACCCTTAGCCCAACTCAGCTTCGAGGCCGACTATTCTCCGTTGTCTTCATCGTCGTCTTCCTCAGACGAAGAAGATGATGATGACAAAGCTCTCTGTTATGGCCTCCGAGAGAACCCTAAGCGAAGCATTCGCCTTGTGGATCCTGACTTTTCCTTCCCCGTAGAATCCGCCTCTGTAATTCTTCAAGACAGAGAAAGCGAAACTGAATCGTCCAAGAATCCAACTCGAAGAAGATCCAGAAGGGCATTTAATAATAATAATCAGTACCACCATCTTCAGAAGAAGATGAAACCCAGTAATGATGATCACCATCATAATTTTCACCATCATAAGAATAAGACCGAGTCGTCTTCTTGGGTTGAGCCTGAACCGGTGAGTTCGATCTCCGATGCGACCACCGAGGAAGATGTCGCATTTTGTCTTATGATGTTGTCCAGGGACGAATGGAAGAGACAAGAGGAAAACGATGAAGAAGAAGAAGACGATGAAGAGGACGAAGAGGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGACGACGAAGGAGAGAGATCCGTGGAAGATTCTGATGAATTCTACGAGGAGATGAAATCATCAAAGGCAAGATCAGTTCGTGGAAGGTACAAATGTGAGACGTGTAAGAAAGTGTTTAGATCATATCAAGCATTGGGAGGTCACAGAGCGAGTCACAAGAAAATCAAAGCGGTGGCCATATGTGAAACAGATAATAATGCTCCGGCCATGGCGGCAGAGAAGAAAATCCATGAATGTCCAGTTTGTTTCAGAGTATTTGCTTCAGGTCAAGCTCTTGGGGGCCACAAGCGAACACACGTGACTGGTTCTGCAACTTCGGCTGTTCGAAGTAGTACTCCATCAACAACAACAACCAAGTTTGGAGATAAAAATAATAATAACAACAGTTTGATAGATCTTAACCTTCCGGCTCCTGTTGATGAAGAAGATGAGATCAGCCAAATTGAAAATTCTGCAGTTTCAGATGCAGAATTCTTCAAACCCAGTTCACAGATCATTGAGGCACAAGTATAG 1164 0.445 MEKHKCKLCFRNFSNGRALGGHMRSHMVNLPVPPKPEPPLAQLSFEADYSPLSSSSSSSDEEDDDDKALCYGLRENPKRSIRLVDPDFSFPVESASVILQDRESETESSKNPTRRRSRRAFNNNNQYHHLQKKMKPSNDDHHHNFHHHKNKTESSSWVEPEPVSSISDATTEEDVAFCLMMLSRDEWKRQEENDEEEEDDEEDEEEEEEEEEEEEEEDDEGERSVEDSDEFYEEMKSSKARSVRGRYKCETCKKVFRSYQALGGHRASHKKIKAVAICETDNNAPAMAAEKKIHECPVCFRVFASGQALGGHKRTHVTGSATSAVRSSTPSTTTTKFGDKNNNNNSLIDLNLPAPVDEEDEISQIENSAVSDAEFFKPSSQIIEAQV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1051 387 MobiDBLite consensus disorder prediction 186 237 - -
Alju05g1051 387 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 378 IPR044303 GO:0006355
Alju05g1051 387 MobiDBLite consensus disorder prediction 312 346 - -
Alju05g1051 387 MobiDBLite consensus disorder prediction 156 171 - -
Alju05g1051 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 247 274 IPR013087 -
Alju05g1051 387 MobiDBLite consensus disorder prediction 191 228 - -
Alju05g1051 387 MobiDBLite consensus disorder prediction 30 66 - -
Alju05g1051 387 Coils Coil 184 224 - -
Alju05g1051 387 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Alju05g1051 387 ProSitePatterns Zinc finger C2H2 type domain signature. 296 316 IPR013087 -
Alju05g1051 387 MobiDBLite consensus disorder prediction 99 171 - -
Alju05g1051 387 MobiDBLite consensus disorder prediction 316 346 - -
Alju05g1051 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 294 321 IPR013087 -
Alju05g1051 387 SUPERFAMILY beta-beta-alpha zinc fingers 246 316 IPR036236 -
Alju05g1051 387 Pfam C2H2-type zinc finger 246 271 - -
Alju05g1051 387 Pfam C2H2-type zinc finger 4 27 - -
Alju05g1051 387 Pfam C2H2-type zinc finger 294 316 - -
Alju05g1051 387 SMART c2h2final6 294 316 IPR013087 -
Alju05g1051 387 SMART c2h2final6 247 269 IPR013087 -
Alju05g1051 387 SMART c2h2final6 4 26 IPR013087 -
Alju05g1051 387 ProSitePatterns Zinc finger C2H2 type domain signature. 249 269 IPR013087 -
Alju05g1051 387 Gene3D Classic Zinc Finger 244 316 - -
Alju05g1051 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1051 Alju-ChrAlju05 25164640 25165803 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1051 1 365 C2H2 Transcription Factor Family AT3G60580 40.800 1.27e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju05g1051 zf-C2H2_6 9.4e-12 CL0361