Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1044 ATGAGCTTCTGCGTACCCACCTGGGATGTTGACAATAATGTTCCCCCAGCCACCAGAACCTCTCTTCCTTCTAACTCCAACTCCACCGTCCCTGATCTCATTCCCACGTTTGACTATGAAGTTGCAGAGCTTACATGGCAGAACGGGCAGATATGGATGAACGGGATGGGTCTGCCACGACCTCCGGCGAAACCCATTACTTCCGGTGTGGTGGCGAGTCCTAGGTCCGATCTGTTGGCCTCCAATAATTCTAAGTATCGTGCTAGTGGTACTTTAGAGTCCATAGTCAATCAAGCTACTAGGTTCTCCCTGAATAGCAAATCAATGATGTCACAAAGTGTTGACGGAGACTGCGGCACTGGTGGTGACGGAGACAAGTTGGTGCCATGTTTTAAACACCGACGCGGTGGTGGGGGTGGCGATGGCGCTGCTGTATCAAACACAATGACTATGGATGCTTTGGTTCCTTGCTCGAATCGTACGGATGAGCAGAGTACGGTGGTTGTAGATGAACCTATGGGTGGAGGGATTGGCACGCGCGGTGGCGGAGTGGGAATGGGTTGCTCAGCGCATGTGAGGTCTTGTGGCGGTGGTGTTGCGAGAGTCCCGGCGGTGGCGCGTGTGCCTGTAGCCCGCCAGTGGGAGCAATGTGTGAGTGAGAGAGATAGCCATCACGTGACCCCTGACACGTGCGATAGGGAAATGGATGTGGGTTATACTTCTGCTTCGATGGGTTCGCCGGAAAACACCAGTTCCGTCCGGCCTTGCACAAAGACGACCGACGCTGACGACCATGATTCTGTTTGCCACAGTACACAGAGAGATGAAGATGAGGAGGAGGACAAAAAAGAAAGGACTATAAAATCTTCATCGTCCAACAAACGGCGTAGAGCTGCTGATGTGCACAATCAATCTGAAAGAAAAAGGCGTGATAAGATCAACCAAAGGATGAAGACATTGCAGAAGCTGGTTCCAAATTCCAGCAAGACTGATAAAGCTTCAATGCTGGATGAAGTAATAGACTATGTGAAGCAACTTCAAGCACAAGTGCAAATGATTAATAGAATGAGTCTATCTTCCATGATGTTGCCAATGACCCTGCAACAGCAACAACTTCAACTCATGTCTATGATGGCTCCAATGGGTATGGGATTGGGTATGGATATGAACACTATGGGCCGCCCTAACATCCCCACCGTCCCTCCGGTTCTCCACCCTTCCACCGCTGCCGGCTTCATGCCGATGGCTGGCTCATGGGACCCGTCTGCTGGCGGCAATCGGCTTCAAGGAGCAGTGCCTGACTTCTGGTCATCATTCCTAGCATGCCAGACACAGCCCATGACCATGGATGCATACAGTAGGATGGCTGCTATGTATCAGCAAATGCAGCAAGCTCCAGCGTCTAGTTCCAAGAATTGA 1419 0.5116 MSFCVPTWDVDNNVPPATRTSLPSNSNSTVPDLIPTFDYEVAELTWQNGQIWMNGMGLPRPPAKPITSGVVASPRSDLLASNNSKYRASGTLESIVNQATRFSLNSKSMMSQSVDGDCGTGGDGDKLVPCFKHRRGGGGGDGAAVSNTMTMDALVPCSNRTDEQSTVVVDEPMGGGIGTRGGGVGMGCSAHVRSCGGGVARVPAVARVPVARQWEQCVSERDSHHVTPDTCDREMDVGYTSASMGSPENTSSVRPCTKTTDADDHDSVCHSTQRDEDEEEDKKERTIKSSSSNKRRRAADVHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIDYVKQLQAQVQMINRMSLSSMMLPMTLQQQQLQLMSMMAPMGMGLGMDMNTMGRPNIPTVPPVLHPSTAAGFMPMAGSWDPSAGGNRLQGAVPDFWSSFLACQTQPMTMDAYSRMAAMYQQMQQAPASSSKN 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1044 472 MobiDBLite consensus disorder prediction 242 257 - -
Alju05g1044 472 SMART finulus 303 352 IPR011598 GO:0046983
Alju05g1044 472 MobiDBLite consensus disorder prediction 219 312 - -
Alju05g1044 472 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 41 471 IPR031066 -
Alju05g1044 472 CDD bHLH_AtPIF_like 297 362 IPR047265 -
Alju05g1044 472 Pfam Helix-loop-helix DNA-binding domain 302 347 IPR011598 GO:0046983
Alju05g1044 472 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 355 IPR036638 GO:0046983
Alju05g1044 472 Coils Coil 303 323 - -
Alju05g1044 472 Gene3D - 291 357 IPR036638 GO:0046983
Alju05g1044 472 FunFam transcription factor UNE10 isoform X1 292 357 - -
Alju05g1044 472 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 297 346 IPR011598 GO:0046983
Alju05g1044 472 MobiDBLite consensus disorder prediction 258 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1044 Alju-ChrAlju05 24753031 24756793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1044 1 453 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 44.586 1.79e-80 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju05g1044 HLH 8.7e-14 No_clan