Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1017 ATGTTTTTTCCGAACTCCTTTCACAATGATGCCCTTTTCAACTACCCCTCGAACGGAGACCTCAACACCGCCGACTCCTACTCCTCCACCGACTCCAGCCACTACGCCGAGCCACTTCTTCCTCCACCGCAAAACCCATTTCACTATCACCACCACCACCACAATGGATCCTCCTTCGCCGACATCTCCTTCAACAATTTCCCTTGCCTCCTATCCCCCGACCTCACTGTCAATGATCTATCCATACCCTACGCCGATGTACCAGAACAAGAATGGCTCTCGGAATTTTTGTACAGTTGCTTCAATGACAACTTCTCGGGGACAGGTGAGACGATGGCGGTGGCGGGTTTCTCCGCTGCACAATCCGACGCGTCGTTTACCGGCAAAGCTGAACATAAGGCTTCGAGAGCAGCCGGTGGAAAATCGAGACCTAAAACTGAGCCAAACGGCGGGTCGTCGTCGTCGTTGGGAGAGGGATCAGGTAAGCGTAGGTGCACCCACTGTGCAACAGATGATACCCCGCAGTGGCGAAGCGGACCCCTGGGACCCAAGACCCTGTGCAATGCGTGCGGGGTGAGGTACAAGTCGGGTCGGCTTGTACCCGAATATCGACCAGCATCAAGTCCGACGTTCGTGCTGAGTCAGCACTCGAACTCGCACCGGAAGGTGCTGGAGCTCCGAAGGCAGAAGGAGCTGATGTTGATAAAGCAGCAAGCTCCACACGAGTAA 729 0.5501 MFFPNSFHNDALFNYPSNGDLNTADSYSSTDSSHYAEPLLPPPQNPFHYHHHHHNGSSFADISFNNFPCLLSPDLTVNDLSIPYADVPEQEWLSEFLYSCFNDNFSGTGETMAVAGFSAAQSDASFTGKAEHKASRAAGGKSRPKTEPNGGSSSSLGEGSGKRRCTHCATDDTPQWRSGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLSQHSNSHRKVLELRRQKELMLIKQQAPHE 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1017 242 MobiDBLite consensus disorder prediction 146 160 - -
Alju05g1017 242 Pfam GATA zinc finger 165 198 IPR000679 GO:0006355|GO:0043565
Alju05g1017 242 ProSiteProfiles GATA-type zinc finger domain profile. 159 195 IPR000679 GO:0006355|GO:0043565
Alju05g1017 242 PANTHER GATA TRANSCRIPTION FACTOR 125 231 - -
Alju05g1017 242 SMART GATA_3 159 209 IPR000679 GO:0006355|GO:0043565
Alju05g1017 242 CDD ZnF_GATA 164 211 IPR000679 GO:0006355|GO:0043565
Alju05g1017 242 ProSitePatterns GATA-type zinc finger domain. 165 190 IPR000679 GO:0006355|GO:0043565
Alju05g1017 242 FunFam GATA transcription factor 157 241 - -
Alju05g1017 242 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 161 222 - -
Alju05g1017 242 MobiDBLite consensus disorder prediction 128 177 - -
Alju05g1017 242 Gene3D - 157 230 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1017 Alju-ChrAlju05 23855423 23856269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1017 40 239 C2C2-Gata Transcription Factor Family AT2G45050 46.753 1.94e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju05g1017 GATA 7e-17 CL0167