Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1011 ATGGCTTCCAACCTTTCAGTATTAGAAAATTTGACTGAAGATAGTTTTGAATTTACAAGTTCGATTTTATTCATTTCAACCCGCGGACCCCCACGAACAATAAACGTATTTGAGTCTCCTTTAATTATCTCTTGTGAAGAGTTCCTTCGAGATGTTTCAGGATTCCTTCGTAGAGCCTTTCATAACGTTCTTCCTGAAACGCGTTTTCAATCCTTGACGTCTGATGTCACATCTGAAGCCCTAAGAATCCTTGAACAAGCCGCTACCTCTGAAACTACTCATCATCATCGCTTGATACCTTTACCCACCTATTTTCGAGTCTTCCATGAAGAAGTTCAAGGGATGAACGAAGTTGACAACAATATTAATTCAGCCATAGAGCAATCGATGCAACAATTGTACATGGTTCCAGCATCAAAAGAAGCTATTGCATCACTAAAAAAATTCAAAGTCTATGGTGAAATAAAAGTAGAACCATGTACCATTTGTTTAGAAAATTTTCATCATGATGATGACCTTTTGATAATGCCATGTGAGCATATTTTTCATAATAATTGTATTGTGAGGTGGTTGAGAACAAGCCATAGGTGTCCTTTGTGTCGCTTTCAAATGGCGGCAGAGTAA 624 0.3782 MASNLSVLENLTEDSFEFTSSILFISTRGPPRTINVFESPLIISCEEFLRDVSGFLRRAFHNVLPETRFQSLTSDVTSEALRILEQAATSETTHHHRLIPLPTYFRVFHEEVQGMNEVDNNINSAIEQSMQQLYMVPASKEAIASLKKFKVYGEIKVEPCTICLENFHHDDDLLIMPCEHIFHNNCIVRWLRTSHRCPLCRFQMAAE 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1011 207 SMART ring_2 160 200 IPR001841 -
Alju05g1011 207 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 87 204 - -
Alju05g1011 207 SUPERFAMILY RING/U-box 159 204 - -
Alju05g1011 207 SMART ringv_2 159 201 IPR011016 GO:0008270
Alju05g1011 207 Pfam Ring finger domain 160 201 IPR001841 -
Alju05g1011 207 ProSiteProfiles Zinc finger RING-type profile. 160 201 IPR001841 -
Alju05g1011 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 206 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1011 Alju-ChrAlju05 23372409 23373032 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1011 120 207 C3H Transcription Factor Family AT1G18760 35.484 1.80e-15 70.5