Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0996 ATGGGTGGTATTGTGTTTGTTCGGGAGCTAGAAACGGCGTCGTCGTGGTGGTCCTCCTCTGGGGGAGAGAGAGGGAGAGATATGTTGGGATACGAATGGGGGAACCCTCCGTCGTCGATTGTGCTTGCCGGCAACGAAGAAGCTGCCGATACCACCGGTGCAGACTCTGACCAGACCCACCGCCAAATCTTCGACCATTACACCTCTCATTCCTTATTGCCGGACCAGCTCCTTCACCACCACCACCACCTCCAGCAGCAGCAGCCTGCAGGGCCCTCACAACACACCAACGCCAGCTCCACCGCTGATTTCTCTCTCTACCAGTTCAGCCCCCAGCCCCACCACCACCACCACCACCAGCACTCCTTCTTTGACCCACGCGCCTTCCCCGGCGCGTCCTCTTCTTCCTTCCCTCCACCACAGCCTCCTCCTCATCCTCCTTCCATGCTTTCTCTTGACCCGCTTCCGGCCGTCAACGCCGGCAACCACTGTGGGCCTGGTGGGTTTCTGGTCGTTCCCAAGTCCGAGGACATGGGTCGGTCCACTGACTTTCCGGCGTCGAGAATTGGGCTCAACCTTGGTGGCCGGACATACTTCTCATCGTCGGAGGATGACTTCGTGAGCCGGCTCTACCGCCGGTCCAGGCCAGCCGAACCGGGGTCGATGATGATGATGGCTTCGAACTCGCCTCGGTGCCAAGCCGAAGGCTGCAATGCCGATCTGTCACACGCTAAGCACTACCACCGCCGTCACAAGGTCTGCGAGTTTCACTCCAAAGCGGCCACCGTCATCGCCGCCGGCTTAACCCAGCGATTCTGCCAACAGTGTAGCAGGTTCCATCTTCTTTCTGAGTTTGACAATGGAAAACGAAGCTGCAGGAAGAGACTGGCAGATCATAATCGTCGCAGAAGGAAAACCCAGCAGCCAAATCAAGAAATCCTGAAAACCCAGATCGACACTTCAAGAAATTCTACTTTTGAAGCTGTTACAAGATCTCCACCGGACTCTGGAGGAGCACAGGCAATGTCGTCGGTGACGGTGGCGGTGTCTCCACCGGACTATTTCCGGCAAACGGCATATCAGAATCAGAGGACAAGTCCATCGGCAACATCAAGCTCACTGTTCTTCTCAAGTGGGTAG 1140 0.5693 MGGIVFVRELETASSWWSSSGGERGRDMLGYEWGNPPSSIVLAGNEEAADTTGADSDQTHRQIFDHYTSHSLLPDQLLHHHHHLQQQQPAGPSQHTNASSTADFSLYQFSPQPHHHHHHQHSFFDPRAFPGASSSSFPPPQPPPHPPSMLSLDPLPAVNAGNHCGPGGFLVVPKSEDMGRSTDFPASRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAEPGSMMMMASNSPRCQAEGCNADLSHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPNQEILKTQIDTSRNSTFEAVTRSPPDSGGAQAMSSVTVAVSPPDYFRQTAYQNQRTSPSATSSSLFFSSG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0996 379 MobiDBLite consensus disorder prediction 108 153 - -
Alju05g0996 379 MobiDBLite consensus disorder prediction 359 379 - -
Alju05g0996 379 FunFam Squamosa promoter-binding-like protein 14 223 293 - -
Alju05g0996 379 MobiDBLite consensus disorder prediction 322 345 - -
Alju05g0996 379 MobiDBLite consensus disorder prediction 133 151 - -
Alju05g0996 379 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 212 368 IPR044817 GO:0003677
Alju05g0996 379 Gene3D - 224 293 IPR036893 GO:0003677|GO:0005634
Alju05g0996 379 ProSiteProfiles Zinc finger SBP-type profile. 229 306 IPR004333 GO:0003677
Alju05g0996 379 SUPERFAMILY SBT domain 230 309 IPR036893 GO:0003677|GO:0005634
Alju05g0996 379 Pfam SBP domain 232 305 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0996 Alju-ChrAlju05 22573753 22576772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0996 28 279 SBP-box Gene Family AT1G02065 46.388 1.96e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Alju05g0996 SBP 1.2e-30 No_clan