Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0988 ATGAACTACCAACAGAGGATCCAAGTTGCGGCGAAAATCATACTTGAGCATGACGCAAGTGCCGCCGACGCGCCGTTTAACCTCGAAGATCTTGGGATCAAGGCGACCCTTAAACCCCACCAGGTGGAGGGAGTTTCGTGGCTCATACGAAGATATAAACTTGGCGTCAACGTTCTCCTCGTGGTTTTATGTCCTCTAAGCGTAACAGATGGTTGGGTTTCAGAGATGGTTAAATTTTCGCCCAAACTAAAAGCAATCAAATATGTTGGAGGGAAAGAATACAGGTGCAGCCTACGGAGGAATATACATGAACATGTAAAGGGACAGTCAAATGTAAGGGTCTTGTTACCTTTTGACGTCCTATTAACAACTTATGATATGGCGCTGATCGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATTATTGATGAAGCTCAAAGACTTAAAAACCCTTCAAGTGTTTTATATAATGTTCTCAAAGAGCACTATGTCATGCCAAGACGGTTGTTGATGACGGGTACTCCTATTCAGAACAACCTTTCTGAACTCTGGGCATTGATGTATTTTTGTATGCCTTCTGTCTTTGGTACACTAGAACAGTTCCTTTCCACATTCAAGGACATCAGTGATCCTACATCAGTTCAAAATACAGTGAAGGCAAAGGATCAACTTAAAATACTGAAAAATATATTAGGAGCTCTTATGCTTCGACGGACCAAGTCAAAGCTTATAGAGTGTGGAACTCTCGTGCTACCATCTCTAACTGAGATAACTGTTATGGCACCCCTAGTCGGCCTGCAAAAAAAGGTCTACATGTCAATTTTGAGGAAGGAGCTTCCTAGGCTACTTGCCCTATCTTCTGGAACTTCAAGTCATCAGTCTCTGCAGAATATTGTGATCCAGCTAAGGAAAGCATGTAGCCATCCTTATCTTTTCCCGGGTATTGAGCCTGAGCCTTATGAAGAGGGTGAACATCTGGTTCAGGCCAGTGGTAAATTGTTGATTCTGGACCAGCTTCTTCAGAAGTTACATTATTCTGGACACCGTGTCCTTCTTTTTGCTCAGATGACCCAAACACTTGATATTTTGCAGGACTTTCTGCAGTTACGAAATTATTCCTATGTGCGTCTTGATGGGTCAGTCAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGTGGCCCATCAGCTAATTCTGTTTTGAATTCTGAAGCAGACCAAAATGGAGCCTTTGTCTTCTTGATCACAACAAGAGCTGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGATACGGTTGTATTCTATGAGCAAGATTGGAATCCTCAAGTAGACAAGCAGGCATTGCAGCGAGCCCATCGGATTGGCCAGATGAACCATGTATTGTGTATTAACCTTATTACAGAAAGAACTGCAGAGGAGGTAATTATGCGGAGGGCAGAGAAGAAATTGCAGCTTAGCCTCAATGTTATAGGTGATAATATTCAGGAACATGAAGATGAACAAAAATCTGGAGTTGGGACTGGTGATTTGAAATCCATCATATTTTGCCTACATATGTTTGATCCTAATGAAAACAATGATGGAGAGCTTGGGGACATGGACTTGTCAGAAATTAATGGTATGACTGATATGGCGATTGCAATGCGTGATGCGCATATATCTGACAAGGATGACCGAAAATTTGAGATCAACCCCAGAAATTTTCTAGAATCATATGATGCTAAGGAAGGAGCTTCTACTTCCTTTAACTCTGATCCTAGTCTTGATGAGGCTTCTTATCTCTCCTGGGTTAAAAAATTTGAGGAACTGTCAAAATCAAGTGGTGACGACTCAATCATGGAGGTGAGAAATAGAGGAATTTTGGATGAGGAAAAGCGTCTAAAACGTGAGGCTGCAAGGAAGCAAGCAGAAGAAAAGAAGCTGTCTAAGTGGGAAGCTCTTGGATACCATTCATTGAATGTGAATGATCCTGTCACCCCTCCAGATGGTGGTAGTCCATCAGATGCTGGATCTGTTCATTTTGTGTATGGAGATTGTACAGAACCATCGAACGTTTGTCCGTCTGAACCTGCCATAATATTCAGTTGTGTTGATACCTCTGGAAACTGGGGCCGTGGAGGAATGTTTAATGCACTGAACAAGCTTTCTTTGAGCATTGGCGATGCCTATGAACGGGCTTCTGAACATGGGGACTTGCATCTTGGGGATCTACATCTTATAAAGCTTGAAGATGATTGTGATGAACAAAATATGGATAGAAGTACTCCCATTTGGGTTGCTTTAGCTGTGGTTCAGTCTTATAATCCAAGGCGTAACGTTCCTCGGAGTTCAATCTCACTTCCCCACTTGGAAAGTTGCTTATCAAAAGCAGCATTCTCAGCCAAGCAAAATTCTGCATCAATACACATGCCCCGTGTAGGTTATCAAGATGGATCGGATCGTTCTAAGTGGTACACCATCGAGCGTCTTCTACGAAAATATGCTTCCATTTATGGCATCAACATATATATACTATTATCAGCGACAATCTCAGTGAAGCTTAAGATTGATTCAAGGACAAGTGAGGATGGTTCTTGGGAATCATACTCTGCCCCCAATGATGTATATATTCTTCACACTATCTTTGTAACTGAACTTTATGTGAATTACTCCAATGGTTCTTAA 2676 0.4212 MNYQQRIQVAAKIILEHDASAADAPFNLEDLGIKATLKPHQVEGVSWLIRRYKLGVNVLLVVLCPLSVTDGWVSEMVKFSPKLKAIKYVGGKEYRCSLRRNIHEHVKGQSNVRVLLPFDVLLTTYDMALIDQDFLSQIPWQYAIIDEAQRLKNPSSVLYNVLKEHYVMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLEQFLSTFKDISDPTSVQNTVKAKDQLKILKNILGALMLRRTKSKLIECGTLVLPSLTEITVMAPLVGLQKKVYMSILRKELPRLLALSSGTSSHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTQTLDILQDFLQLRNYSYVRLDGSVRAEERFAAIRSFSGPSANSVLNSEADQNGAFVFLITTRAGGVGLNLVAADTVVFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLITERTAEEVIMRRAEKKLQLSLNVIGDNIQEHEDEQKSGVGTGDLKSIIFCLHMFDPNENNDGELGDMDLSEINGMTDMAIAMRDAHISDKDDRKFEINPRNFLESYDAKEGASTSFNSDPSLDEASYLSWVKKFEELSKSSGDDSIMEVRNRGILDEEKRLKREAARKQAEEKKLSKWEALGYHSLNVNDPVTPPDGGSPSDAGSVHFVYGDCTEPSNVCPSEPAIIFSCVDTSGNWGRGGMFNALNKLSLSIGDAYERASEHGDLHLGDLHLIKLEDDCDEQNMDRSTPIWVALAVVQSYNPRRNVPRSSISLPHLESCLSKAAFSAKQNSASIHMPRVGYQDGSDRSKWYTIERLLRKYASIYGINIYILLSATISVKLKIDSRTSEDGSWESYSAPNDVYILHTIFVTELYVNYSNGS 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0988 891 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 338 509 IPR001650 -
Alju05g0988 891 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 61 583 IPR031053 GO:0003678|GO:0006281|GO:0006338
Alju05g0988 891 SMART ultradead3 33 204 IPR014001 -
Alju05g0988 891 CDD SF2_C_SNF 327 470 - -
Alju05g0988 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 506 IPR027417 -
Alju05g0988 891 CDD Macro_Poa1p-like_SNF2 675 835 - -
Alju05g0988 891 Gene3D - 253 555 IPR027417 -
Alju05g0988 891 SUPERFAMILY Macro domain-like 676 841 IPR043472 -
Alju05g0988 891 Coils Coil 621 651 - -
Alju05g0988 891 FunFam Putative helicase CHR10 252 563 - -
Alju05g0988 891 Gene3D - 59 251 IPR038718 -
Alju05g0988 891 Pfam Helicase conserved C-terminal domain 335 459 IPR001650 -
Alju05g0988 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 241 IPR027417 -
Alju05g0988 891 Pfam SNF2-related domain 61 314 IPR000330 GO:0005524|GO:0140658
Alju05g0988 891 Gene3D Leucine Aminopeptidase, subunit E, domain 1 672 842 IPR043472 -
Alju05g0988 891 SMART helicmild6 364 459 IPR001650 -
Alju05g0988 891 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 61 196 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0988 Alju-ChrAlju05 22251001 22271144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0988 333 477 RAD5 or RAD16-like Gene Family AT5G22750 37.241 3.83e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju05g0988 SNF2_N 6.6e-37 CL0023