Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0894 ATGCATTTCCCTCCCTCCATTTATATACCCTCCTTCCCTCTCTCGCTCTTTTGTTTCTCTGTCTTCTCTCTCTCTCTCTCGCGTTCAGCCATGGCTTATCCACCACCTTACACCCTAAACGTCATCGGATCAGAGCCTGAATCCTTCACCGGAACGACTTCTACCTCTGATGATCAAGCTTCTTCGCAACATTTCTCTTCGGCTTTTCAGAATCTCAACACCAGCGTTCTCATTATTGTTATCGTCCTCGCCGTAACCGTCATTGTGTCGCTCTCTCTCTGCCTGCTCCTTCGTCACCTCAATCTCCGGTGCCTCCGACGGCTATCTCCGTCATCTTTTTCGTCGTCATCCAGGATGAATGCAACGCCTGCGACAGCGACTGCGACTACCATGCCTGTTTTCTCTTCCAGTCGTCGCGTCTCGCCGGAGATTCCGTCGGCTTCCATTATTGACTCGCTTCCGATGTTTAATTTTTCTTCTATTACTCGTCGCTCTTCTGCTGCTGATACTACCGGCGGCGACTGTGCGGTCTGCCTCTCGAAATTTGAGCAGCGAGACCTCCTCCGTCTTCTGCCGCTGTGTTGTCACGCCTTCCATGTCGAATGCATTGACACATGGCTTCAGTCCAATTTGACTTGTCCGCTGTGCCGATCTGCGATTTTTGCCTCTGATTCGGAGCTAATGAAGGTTCTCCAATCGTCGCTCGCCGACGGTGGAGGCAGCGATAGTTTCCGGCTAGAAATCGGGAACATCAGCCGCCGTGGATCGGCACCACCAGACGTTGCCGGAGACCCGCGTGCGAGGTCCAGGTCTTATTCCGTTGGCTCCTTTGAGTATTTCGTTGACGAGGACTTCGAGGTTCCTATCAGCCGCGCACATCAGAGAAGCGTATCGGAGAATAAAGACGAACCGGTCACTGTAGAATCTCAATCGGCGGCGGCGGCTCAGTCCGCTCATGAAGCGAGTTTAGCCGCGGATGTTGCCGGAAGCGGGAGGAGCTGGTGGCTGAAGGAATACATAGACCGGCTGTCATCTTCTATATCCTCCCGAACAGTATCCTTTAGAGGCTCTGGCAGGTTCTTTACCAGCGGCAATGCTAGCCACCGGAGCGACGCCGGCATCTCCGCCGAGGACTGCGACGTGGAAGCAATGAGATTAGGCGAAGAAATTAGCGAAACTTTTAGATGGCTGTCAGGGGTATGA 1203 0.5328 MHFPPSIYIPSFPLSLFCFSVFSLSLSRSAMAYPPPYTLNVIGSEPESFTGTTSTSDDQASSQHFSSAFQNLNTSVLIIVIVLAVTVIVSLSLCLLLRHLNLRCLRRLSPSSFSSSSRMNATPATATATTMPVFSSSRRVSPEIPSASIIDSLPMFNFSSITRRSSAADTTGGDCAVCLSKFEQRDLLRLLPLCCHAFHVECIDTWLQSNLTCPLCRSAIFASDSELMKVLQSSLADGGGSDSFRLEIGNISRRGSAPPDVAGDPRARSRSYSVGSFEYFVDEDFEVPISRAHQRSVSENKDEPVTVESQSAAAAQSAHEASLAADVAGSGRSWWLKEYIDRLSSSISSRTVSFRGSGRFFTSGNASHRSDAGISAEDCDVEAMRLGEEISETFRWLSGV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0894 400 ProSiteProfiles Zinc finger RING-type profile. 175 217 IPR001841 -
Alju05g0894 400 SMART ring_2 175 216 IPR001841 -
Alju05g0894 400 FunFam E3 ubiquitin-protein ligase ATL6 135 223 - -
Alju05g0894 400 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 71 300 - -
Alju05g0894 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 221 IPR013083 -
Alju05g0894 400 SUPERFAMILY RING/U-box 150 222 - -
Alju05g0894 400 CDD RING-H2_EL5-like 174 217 - -
Alju05g0894 400 Pfam Ring finger domain 174 217 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0894 Alju-ChrAlju05 19087967 19089169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0894 148 222 C3H Transcription Factor Family AT2G18650 56.000 4.57e-21 92.4