Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0798 ATGTCCCAATATTTCCATTATCCCTCACCTGATTCTACTCAACATTCTTGCAGTACTTTAGAAGCAATCCGACAGCACCTCCTTGGCAACGAAATGGCCGACTTACCGCGGCTATATTCTCCGGCAACACTCTCCAACGACATCACGTTTCACGGCCAGATCCCGCCAGTGTATGACGGTGGTTATGTCAATGAACTAGTTCCACAAGTTTGCTCCATTGATGATAACAATATCCATATAGCGGTGGCGCGCGGTGATGAGTACAGTAATGTCGCGCCACCGGTTGAGCAGCAGGGCTACCGGGGTGTTAGGCGGCGGCCTTGGGGGAAATACGCGGCGGAGATTAGGGATCCGGCAAAAAATGGTGCTAGGGTTTGGCTTGGAACTTATGATACGGCGGAGGATGCAGCTATAGCTTATGATCGAGCAGCTTATGAGATGCGTGGAGCTAAAGCGAAGCTTAATTTTCCTCACCTTGTGGGCACAAATGTGTGGGAGTCGGTTCGAGCCACTCGGAAGCGGTGCGTCCTCACCATGGCCGGTGGCGGCGACCGTGAGGAGTGTTCTTCAAAGGTTAAGCGGATAAGAAAAAGGCTTTTCAAAGCCTGCGTGTTGAATTGCAGCAAGATGCAGGTCTGTATCGTTTTCTACTGA 654 0.5107 MSQYFHYPSPDSTQHSCSTLEAIRQHLLGNEMADLPRLYSPATLSNDITFHGQIPPVYDGGYVNELVPQVCSIDDNNIHIAVARGDEYSNVAPPVEQQGYRGVRRRPWGKYAAEIRDPAKNGARVWLGTYDTAEDAAIAYDRAAYEMRGAKAKLNFPHLVGTNVWESVRATRKRCVLTMAGGGDREECSSKVKRIRKRLFKACVLNCSKMQVCIVFY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0798 217 CDD AP2 100 159 IPR001471 GO:0003700|GO:0006355
Alju05g0798 217 ProSiteProfiles AP2/ERF domain profile. 99 157 IPR001471 GO:0003700|GO:0006355
Alju05g0798 217 SMART rav1_2 99 163 IPR001471 GO:0003700|GO:0006355
Alju05g0798 217 FunFam Ethylene-responsive transcription factor 2 98 158 - -
Alju05g0798 217 Gene3D AP2/ERF domain 99 159 IPR036955 GO:0003700|GO:0006355
Alju05g0798 217 PRINTS Ethylene responsive element binding protein signature 100 111 IPR001471 GO:0003700|GO:0006355
Alju05g0798 217 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Alju05g0798 217 Pfam AP2 domain 99 149 IPR001471 GO:0003700|GO:0006355
Alju05g0798 217 PANTHER DNA-BINDING DOMAIN 87 171 IPR044808 GO:0003700|GO:0009873
Alju05g0798 217 SUPERFAMILY DNA-binding domain 99 158 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0798 Alju-ChrAlju05 15737994 15739075 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0798 27 174 AP2-EREBP Transcription Factor Family AT2G44840 46.622 6.08e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju05g0798 AP2 7.3e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju05g0798 05 15737994 15739075 Alju05g0798 05 15737994 15739075 ECH