Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0793 ATGTTCACGGTGGAGATCTGGGACCTGAAGAAGACCGGTGCGAGGACGTGGCTGGGAACTTATGAGAGGGAAGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCCAGATGCATGGTAGAAAAGCCAAGCTCAATTTTCCACACCTCATCGGATTGGAACAACCACTGCCAGAGCTGCTAAGAGTGGTGGTGGCTGGACAGAAGCAGCGCAGCTCGTCAAAACCGTCATTGCCGTCAAAAAGTACATATGAGGATGATGGATCTCAAGGGTCAAGTAGGAAGAAGAGCCTAATTTGA 300 0.4967 MFTVEIWDLKKTGARTWLGTYEREEDAALAYDRAAFQMHGRKAKLNFPHLIGLEQPLPELLRVVVAGQKQRSSSKPSLPSKSTYEDDGSQGSSRKKSLI 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0793 99 CDD AP2 5 50 IPR001471 GO:0003700|GO:0006355
Alju05g0793 99 Gene3D AP2/ERF domain 1 50 IPR036955 GO:0003700|GO:0006355
Alju05g0793 99 Pfam AP2 domain 10 40 IPR001471 GO:0003700|GO:0006355
Alju05g0793 99 SUPERFAMILY DNA-binding domain 3 49 IPR016177 GO:0003677
Alju05g0793 99 PANTHER DNA-BINDING DOMAIN 3 83 IPR044808 GO:0003700|GO:0009873
Alju05g0793 99 MobiDBLite consensus disorder prediction 68 99 - -
Alju05g0793 99 ProSiteProfiles AP2/ERF domain profile. 1 48 IPR001471 GO:0003700|GO:0006355
Alju05g0793 99 SMART rav1_2 1 54 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0793 Alju-ChrAlju05 15639296 15639764 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0793 2 85 AP2-EREBP Transcription Factor Family AT2G44840 55.952 2.25e-23 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju05g0793 AP2 4.1e-05 CL0081