LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju05g0792	ATGAACCCTAGTTTTTCTCCTTTCGAATCATCAATTCAACAATATCGGATTGAAGATGATGATCCTTCATCCATGACTCTAATTAATGGTTTCTTCATGGGCAACCCTACATGGAATTTGACCTATGACGCTGCTAATTTGCCGGACCAGGGCGTTAGTAACTCCGGTGGTGCGATGTTTTCAGGTGGGAATGACGACAACAACGCTATTAATCCAGGTGAATATGATGGTATTGTTAATGGTAATAATAACACAGGATCTGTGGCTTGTGAAAAGAACGCGCCACCTAGATGGAGAAATTACCGAGGTGTGAGGCGGCGGCCATGGGGGAAGTTCGCGGCAGAGATTCGGGACCCGAACAGGAATGGGGCGAGGACATGGCTGGGAACCTATGAGAGGGAGGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCAAGATGAAGGGAAGAAAAGCCAAGCTCAATTTTCCACACCTCATTGGGTCGGAACCACCGCCGGAGCCGGCAAGAGTAGTCGCTGGGCAGAAGCGGCCCCACCTTCATCAGGAAGAAAAGTCAGCAGGCTGGTCAAGCAAATAA	582	0.488	MNPSFSPFESSIQQYRIEDDDPSSMTLINGFFMGNPTWNLTYDAANLPDQGVSNSGGAMFSGGNDDNNAINPGEYDGIVNGNNNTGSVACEKNAPPRWRNYRGVRRRPWGKFAAEIRDPNRNGARTWLGTYEREEDAALAYDRAAFKMKGRKAKLNFPHLIGSEPPPEPARVVAGQKRPHLHQEEKSAGWSSK	193

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju05g0792	193	ProSiteProfiles	AP2/ERF domain profile.	100	158	IPR001471	GO:0003700\|GO:0006355
	Alju05g0792	193	PRINTS	Ethylene responsive element binding protein signature	140	160	IPR001471	GO:0003700\|GO:0006355
	Alju05g0792	193	PRINTS	Ethylene responsive element binding protein signature	101	112	IPR001471	GO:0003700\|GO:0006355
	Alju05g0792	193	PANTHER	DNA-BINDING DOMAIN	83	173	IPR044808	GO:0003700\|GO:0009873
	Alju05g0792	193	FunFam	Ethylene-responsive transcription factor 2	99	159	-	-
	Alju05g0792	193	SUPERFAMILY	DNA-binding domain	100	159	IPR016177	GO:0003677
	Alju05g0792	193	MobiDBLite	consensus disorder prediction	157	193	-	-
	Alju05g0792	193	Pfam	AP2 domain	100	150	IPR001471	GO:0003700\|GO:0006355
	Alju05g0792	193	CDD	AP2	100	160	IPR001471	GO:0003700\|GO:0006355
	Alju05g0792	193	SMART	rav1_2	100	164	IPR001471	GO:0003700\|GO:0006355
	Alju05g0792	193	Gene3D	AP2/ERF domain	99	159	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju05g0792	Alju-ChrAlju05	15615980	15616561	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju05g0792	100	180	AP2-EREBP Transcription Factor Family	AT2G44840	70.370	1.58e-34	120

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju05g0792		AP2	1.4e-12	CL0081