Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0787 ATGATTCCTAATCATTCTCCTTCCCAATCAGTTCAACAATACTTCATTGAAGATGATCCTTCCTTTATGGACCCCATGAATGATGGATTCTTCTTCACCAGCAACCCTGCTTCACCGGAGCAGGGTGTTAGTAGCTCCACTGGCGCAGTGCTTTATGGCGAATATAATGATCACAACGCAGTGAGACCAGGTGGTAATGACACAGGATCTATGGCGAGTGAAGGGAACGCGCCACCAAGATGGAGGCATTACCGAGGCGTTAGGCGGCGGCCGTGGGGGAAGTTCACGGCGGAGATCCGGGACCCAAAGAGGAACGGTGCGAAGACGTGGCTGGGAACTTATGAGAGGGAAGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCCAGATGCATGGTAGAAAAGCCAAGCTCAATTTCCCACACCTCATCGGATCGGAACAACCACTGCCGGAGCCGCCAAGAGTGGTGGTGGCTGGACACAAGCAGCGTGGCTCACCGTCATCGCCGTCAAACAGTACATCTGAGGATGATGGATCTCAAGGGTCATGTAGGAAGAAGCGCCTCACTGGACTATTGAACAAGTTAGCAACAAATAGAAGCCACGTCAGATTGGGTTGA 621 0.5153 MIPNHSPSQSVQQYFIEDDPSFMDPMNDGFFFTSNPASPEQGVSSSTGAVLYGEYNDHNAVRPGGNDTGSMASEGNAPPRWRHYRGVRRRPWGKFTAEIRDPKRNGAKTWLGTYEREEDAALAYDRAAFQMHGRKAKLNFPHLIGSEQPLPEPPRVVVAGHKQRGSPSSPSNSTSEDDGSQGSCRKKRLTGLLNKLATNRSHVRLG 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0787 206 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Alju05g0787 206 PRINTS Ethylene responsive element binding protein signature 123 143 IPR001471 GO:0003700|GO:0006355
Alju05g0787 206 PANTHER DNA-BINDING DOMAIN 59 174 IPR044808 GO:0003700|GO:0009873
Alju05g0787 206 MobiDBLite consensus disorder prediction 144 206 - -
Alju05g0787 206 Gene3D AP2/ERF domain 82 142 IPR036955 GO:0003700|GO:0006355
Alju05g0787 206 SUPERFAMILY DNA-binding domain 83 142 IPR016177 GO:0003677
Alju05g0787 206 CDD AP2 83 143 IPR001471 GO:0003700|GO:0006355
Alju05g0787 206 MobiDBLite consensus disorder prediction 164 179 - -
Alju05g0787 206 FunFam Ethylene-responsive transcription factor 2 82 142 - -
Alju05g0787 206 ProSiteProfiles AP2/ERF domain profile. 83 141 IPR001471 GO:0003700|GO:0006355
Alju05g0787 206 Pfam AP2 domain 83 133 IPR001471 GO:0003700|GO:0006355
Alju05g0787 206 SMART rav1_2 83 147 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0787 Alju-ChrAlju05 15479978 15480598 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0787 73 156 AP2-EREBP Transcription Factor Family AT2G44840 68.605 1.88e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju05g0787 AP2 9.1e-12 CL0081