Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0720 ATGGTTAAAATACAAACCCAGAAGCACAGTTATGTAGGCTTAAAGCCTAGGAATAGCCATTTATGTCATCATGGAGCCAATTTCCCAACTCTGACACAAGACTCTTCTCTCTCTCTCTCTCTCACCCTTTGTTTGGTTTCCCGGAAAGTGACTCTGGTTTTTTTCTCAGAGAAAAATATGGCGGAGAAAGATGATGGTTTGGGCTTAGGTTTGAGCCTGAGCTTGGGACTGGGAATGAATCCGTCTTCTTCTTCTCAGGAAAGTCTCATGCAGAAGAAGATTTCTTCTCGAACGGTTTTGAACCAGAGAGGTTCATGGAATGATATTTTCCAGTTACCAGATCGGAGCTGCGAGACGAGGACGTTGCTCCGGGGAGTGGATGTTAACTTAGCGCCGCCGTCGTTGACGGTGGTGGACTGTGACGACGAGAATGGCGTTTCCTCACCGAACAGTACTGTGTCGAGCATCAGCGGAAAGCGGAGTGAGAGAGAGTCTATTGGCGGCGAGCATGAAGCCGAGCGTGCGTCCTGTTCTCGAGGGAGTGATGATGATGACGGCGGCGACGGAGACGGCGGTGGAAGAGATGGCGACGGCGACGGTGACGGCGATACTTCGAGGAAGAAGCTACGGCTGTCGAAGGAACAATCGATTGTGCTGGAAGAAACATTCAAGGAACACAATACCCTCAATCCGAAGCAAAAACAGGAATTGGCGAAACAGCTGAATCTGAGGGCGAGGCAAGTGGAAGTGTGGTTTCAGAACAGGAGGGCAAGGACTAAGTTGAAGCAAACTGAAGTGGATTGTGAGTACTTAAGGAGATGTTGTGAGACTTTGACTGAAGAGAACAGGAGACTGCAAAAGGAAGTGCAAGAACTTAGGGCACTAAAACTATCCCCACAACTCTACATGCACATGAACCCTCCCACCACTCTCACAATGTGCCCTTCATGTGAGCGTGTCGCCGTCTCATCCACATCCTCCTCCTCCTCAACAGCCACCGCCGCAGGAACTCCCGCCACAATGGCTTCGTCCAACTCAGCCCCATTGAGCTCCAGCATTCAAAGGCCGGTTCCCCTCCTCCCTTGGACGGCTAATTCAAATCGAAACCGCCCGGCAGACCGGCCATAA 1128 0.5089 MVKIQTQKHSYVGLKPRNSHLCHHGANFPTLTQDSSLSLSLTLCLVSRKVTLVFFSEKNMAEKDDGLGLGLSLSLGLGMNPSSSSQESLMQKKISSRTVLNQRGSWNDIFQLPDRSCETRTLLRGVDVNLAPPSLTVVDCDDENGVSSPNSTVSSISGKRSERESIGGEHEAERASCSRGSDDDDGGDGDGGGRDGDGDGDGDTSRKKLRLSKEQSIVLEETFKEHNTLNPKQKQELAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSTSSSSSTATAAGTPATMASSNSAPLSSSIQRPVPLLPWTANSNRNRPADRP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0720 375 SUPERFAMILY Homeodomain-like 193 263 IPR009057 -
Alju05g0720 375 MobiDBLite consensus disorder prediction 327 375 - -
Alju05g0720 375 ProSiteProfiles 'Homeobox' domain profile. 202 262 IPR001356 GO:0003677
Alju05g0720 375 MobiDBLite consensus disorder prediction 162 211 - -
Alju05g0720 375 ProSitePatterns 'Homeobox' domain signature. 237 260 IPR017970 GO:0000981|GO:0006355
Alju05g0720 375 SMART halz 262 305 IPR003106 GO:0006355|GO:0043565
Alju05g0720 375 Pfam HD-ZIP protein N terminus 60 164 IPR006712 GO:0005634
Alju05g0720 375 MobiDBLite consensus disorder prediction 327 369 - -
Alju05g0720 375 Pfam Homeobox associated leucine zipper 262 296 IPR003106 GO:0006355|GO:0043565
Alju05g0720 375 Pfam Homeodomain 206 260 IPR001356 GO:0003677
Alju05g0720 375 Coils Coil 268 298 - -
Alju05g0720 375 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 72 338 - -
Alju05g0720 375 FunFam Homeobox-leucine zipper protein 18 194 267 - -
Alju05g0720 375 MobiDBLite consensus disorder prediction 141 161 - -
Alju05g0720 375 CDD homeodomain 206 263 IPR001356 GO:0003677
Alju05g0720 375 Gene3D - 199 267 - -
Alju05g0720 375 SMART HOX_1 204 266 IPR001356 GO:0003677
Alju05g0720 375 MobiDBLite consensus disorder prediction 137 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0720 Alju-ChrAlju05 13128209 13130449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0720 103 372 Homeobox Transcription Factor Family AT3G60390 61.348 2.82e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju05g0720 HD-ZIP_N 6e-30 No_clan