Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0633 ATGGATAATGATAGAGCTTCACAATCCCAAAGAAAACGCAAGAACCCTTCCTTCTTCAAGGTTCTAATCCAAGATTTCTCTACCCGCTTGCAAATCCCACCAGCTTTTAACAAGGTCTTTGGTAAGGAGGTGCCAAAGAAAGCGATTCTTGAGACTTATTATGGAAAATCTGAAGAAGTTGAGGTGGAAAAGCATGAGAATCGATTTTGTTTCTGTAAGGGATGGAGTAAATTTGTGGAGAATAATAAATTAGAGAATGGAGATTTTTTAGTGTTTAAATATTTGTTAGATTGTTCAAAGTTTAAGGTCAAAATCTATGGCAAAACATGCTGTGAGAAGGAACATTATTGTCCTTCAGAAACTGGGAAAAACGAAGATGAGAGAGATGGACGAAAAAGAAAGAGGGAAGAAGAAAAAGAACAAGATAATAATGTGAAGGTAGATGGAACTTTTAAAGCTGCAAAAAGGATTGAGACAGATTCTGATTCTGATTCTGATTCTGATTTTGGAGAAGAAGCTTCTGAAGATGAACCAATCAATCTTGATTCTGATACTGATTCTAGTTCTTCTCATCCTATCGTGGAAGAAGAAATTGGTAATTCGAAGCAACCATCGAGTGAAGAAGAGAATGGACAGCCCAAAAGTTTGCAAAGTGATAACCAAATAGAATTCAAACCTGAAAGGCCTTCCTTCCGAGTCAAACTCAAATCTTCAAGCATCAGTAGCTATCTGAATATACCATTAAGCTTTTCAAGGAAATATATAAAAGAGTGTCAAAGCCAAGAGATCAAACTTGAGACGCCCAACAAAAAAGTATGGGAATTGGGTCTTTTTGTGTTGTGGGGAGTTGTTGATAAGAAGAAGGAAATGGCCGGAGCAAGACTGACTCAAGGATGGAGGAACTTGGTCTCAGAATATCATCTCCAAATGGGAGATATCTGCATCTTTGAATTGATCCAACCAATTCATGATCTTGCCTTTTATCTTCATGTCTTTCGACGGGATGCTCAAAACAAGAAGTTTATTCGCATACTTTAG 1038 0.3728 MDNDRASQSQRKRKNPSFFKVLIQDFSTRLQIPPAFNKVFGKEVPKKAILETYYGKSEEVEVEKHENRFCFCKGWSKFVENNKLENGDFLVFKYLLDCSKFKVKIYGKTCCEKEHYCPSETGKNEDERDGRKRKREEEKEQDNNVKVDGTFKAAKRIETDSDSDSDSDFGEEASEDEPINLDSDTDSSSSHPIVEEEIGNSKQPSSEEENGQPKSLQSDNQIEFKPERPSFRVKLKSSSISSYLNIPLSFSRKYIKECQSQEIKLETPNKKVWELGLFVLWGVVDKKKEMAGARLTQGWRNLVSEYHLQMGDICIFELIQPIHDLAFYLHVFRRDAQNKKFIRIL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0633 345 ProSiteProfiles B3 DNA-binding domain profile. 15 109 IPR003340 GO:0003677
Alju05g0633 345 SMART B3_2 231 335 IPR003340 GO:0003677
Alju05g0633 345 SMART B3_2 18 109 IPR003340 GO:0003677
Alju05g0633 345 MobiDBLite consensus disorder prediction 117 163 - -
Alju05g0633 345 PANTHER B3 DOMAIN-CONTAINING 9 319 - -
Alju05g0633 345 Gene3D - 211 336 IPR015300 -
Alju05g0633 345 MobiDBLite consensus disorder prediction 164 182 - -
Alju05g0633 345 Pfam B3 DNA binding domain 234 334 IPR003340 GO:0003677
Alju05g0633 345 Pfam B3 DNA binding domain 18 106 IPR003340 GO:0003677
Alju05g0633 345 CDD B3_DNA 229 333 IPR003340 GO:0003677
Alju05g0633 345 MobiDBLite consensus disorder prediction 183 223 - -
Alju05g0633 345 ProSiteProfiles B3 DNA-binding domain profile. 229 335 IPR003340 GO:0003677
Alju05g0633 345 CDD B3_DNA 16 106 IPR003340 GO:0003677
Alju05g0633 345 SUPERFAMILY DNA-binding pseudobarrel domain 224 335 IPR015300 -
Alju05g0633 345 MobiDBLite consensus disorder prediction 117 223 - -
Alju05g0633 345 SUPERFAMILY DNA-binding pseudobarrel domain 13 114 IPR015300 -
Alju05g0633 345 Gene3D - 9 111 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0633 Alju-ChrAlju05 11031471 11034036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0633 14 321 B3 DNA Binding Superfamily AT5G66980 27.356 3.44e-17 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju05g0633 B3 1e-14 CL0405