Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0627 ATGGCTTCACAATTCGTACGAAGAGATAAAAGGAAGCCTTCATTCTTCAAAGTCCTTGTCAATGATTTCTCTACTCGCTTGCAAATCCCACAATCTTTTATCAAGGAGTTTGGGAAAGACGGCGTGCCAAAGAGAACAACACTTCAGACTTATAATGGTGAATATTGGGAAGTTGGAGTAGAAAAGCTGGGGAACAAATTTTATTTTAATAATGGCTGGGATAAATTTGTTCAAGTCAATAGTCTGGAAAATGGAGATTTCCTGGTGTTAAAGCATTTTGCGGATTATTCAAAGTTTAAGGTCAAAATCTATGGAAAAACTTGCTGTGAGAAGCAATTGAACTTGGTTACTGGGGAGAGATGTTCTGAACCTCTTAATGGCAAACAAGTCCTGAGGAATGAACAAGAAGGAAGAAACAGAAAGAGGCGCAATGAAGAAAATGATGATAATGTAAACAAAGATAGAGAATCCAAAGCTTTCAAAAGTGACATCATTAAACTTGAATCTGATGGCTCTTACTCCTCTTTTGATGATGACGATGATGATGAACAAGAAATTGGTAAGCTTCAAAAAGCGTCGAGAATGCCTCCAGAATATCATAACTATATCGAATTCGAATATGAAAATAAGTATTTTCATCTCCAACTCAAGCATTCAAGTGCCAACCATTATCTGCATATACCCACAGATTTTTTCAACGAACATATGAAGGAAAACAAAAGGATCAAGTTAGAGGTATCTGAGAAAACATGGAAAATGGAGATTCATGTGTACGAAGATGAACGACGTAAGAAACGAAGAAAGGATGCCAGATTGACTAAGGGATGGAAGGGATTGGTGAAAGAACATCATTTGAAAATGGGAGATATCTGCGTCTTTGAAATGATTAATAAATGTTATGATTCTGATTATTCTGTGTTTCATGTTCATGTTTATAGGTGGGATCATCAGAAAGCAGAGTTTTCCAAGATAATTTAG 978 0.3609 MASQFVRRDKRKPSFFKVLVNDFSTRLQIPQSFIKEFGKDGVPKRTTLQTYNGEYWEVGVEKLGNKFYFNNGWDKFVQVNSLENGDFLVLKHFADYSKFKVKIYGKTCCEKQLNLVTGERCSEPLNGKQVLRNEQEGRNRKRRNEENDDNVNKDRESKAFKSDIIKLESDGSYSSFDDDDDDEQEIGKLQKASRMPPEYHNYIEFEYENKYFHLQLKHSSANHYLHIPTDFFNEHMKENKRIKLEVSEKTWKMEIHVYEDERRKKRRKDARLTKGWKGLVKEHHLKMGDICVFEMINKCYDSDYSVFHVHVYRWDHQKAEFSKII 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0627 325 ProSiteProfiles B3 DNA-binding domain profile. 210 315 IPR003340 GO:0003677
Alju05g0627 325 MobiDBLite consensus disorder prediction 171 193 - -
Alju05g0627 325 ProSiteProfiles B3 DNA-binding domain profile. 12 107 IPR003340 GO:0003677
Alju05g0627 325 Gene3D - 197 316 IPR015300 -
Alju05g0627 325 CDD B3_DNA 13 104 IPR003340 GO:0003677
Alju05g0627 325 SMART B3_2 212 315 IPR003340 GO:0003677
Alju05g0627 325 SMART B3_2 15 107 IPR003340 GO:0003677
Alju05g0627 325 Gene3D - 6 109 IPR015300 -
Alju05g0627 325 MobiDBLite consensus disorder prediction 133 155 - -
Alju05g0627 325 SUPERFAMILY DNA-binding pseudobarrel domain 205 315 IPR015300 -
Alju05g0627 325 SUPERFAMILY DNA-binding pseudobarrel domain 11 113 IPR015300 -
Alju05g0627 325 Pfam B3 DNA binding domain 15 104 IPR003340 GO:0003677
Alju05g0627 325 Pfam B3 DNA binding domain 216 298 IPR003340 GO:0003677
Alju05g0627 325 CDD B3_DNA 210 313 IPR003340 GO:0003677
Alju05g0627 325 MobiDBLite consensus disorder prediction 128 155 - -
Alju05g0627 325 PANTHER B3 DOMAIN-CONTAINING 9 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0627 Alju-ChrAlju05 10804911 10806427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0627 13 104 REM Transcription Factor Family AT3G53310 35.484 1.87e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju05g0627 B3 4.3e-14 CL0405