Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0626 ATGAATATGTTTGGTGAAGTAATTCCAAACCAAACAATACTCGAGGCTTTCGGAAAAAATGTAGAAGTCAAAGTGGAAAAGATTGGAAAGAGATTATATTTCAGTAATGGGTCGAGTGAATTTGTAAAAGCTAATAATTTGGAGCTAGGTGACTTTTTACTCTTCAAATATTTCCCTGATCATTCAAAGTTCAAGGTTACAGTCTATGGGAAAACATGCTGTGTGAAGCATTTCAATAATGGAGCCAAAGAGAGATGTTCTGAACCAGTGAAAGTAAAAGAAGGAAGAAAAAGGAAGCAGCAGGTTGATACTGAAGGTTTCGTCGAAGCAAAACGCATGGAGAGTGAATTTTATCCAACCGAAGTAATTAAAATCGATTCTTCTTCTTCTTCTTCTGATGATGATGATGATGGCGATGATGATGATCATGAAACTGTTCAACTCCAGTTTTCATATATTGCTGACACTTCTCTGTACATACCAGCACGATTTTTTAGTGAACATATGATGAAGGAAAGCAAAAAGGTGAGGTTTGAGATATCCCAGAGAAGTTGGAATATGAAGCTTGAGGTGATAGAACGAAGAAGGGGTGGTACCAAAGCAGCGACGATAAGTAAGGGATGGAAGAGATTTGTGAACGAACTGCGTCTGCAAATTGGAGATGTTTGCTTTTTTTAA 678 0.3732 MNMFGEVIPNQTILEAFGKNVEVKVEKIGKRLYFSNGSSEFVKANNLELGDFLLFKYFPDHSKFKVTVYGKTCCVKHFNNGAKERCSEPVKVKEGRKRKQQVDTEGFVEAKRMESEFYPTEVIKIDSSSSSSDDDDDGDDDDHETVQLQFSYIADTSLYIPARFFSEHMMKESKKVRFEISQRSWNMKLEVIERRRGGTKAATISKGWKRFVNELRLQIGDVCFF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0626 225 Gene3D - 1 74 IPR015300 -
Alju05g0626 225 ProSiteProfiles B3 DNA-binding domain profile. 143 225 IPR003340 GO:0003677
Alju05g0626 225 Pfam B3 DNA binding domain 16 68 IPR003340 GO:0003677
Alju05g0626 225 Pfam B3 DNA binding domain 152 225 IPR003340 GO:0003677
Alju05g0626 225 CDD B3_DNA 20 69 IPR003340 GO:0003677
Alju05g0626 225 SUPERFAMILY DNA-binding pseudobarrel domain 14 74 IPR015300 -
Alju05g0626 225 ProSiteProfiles B3 DNA-binding domain profile. 1 72 IPR003340 GO:0003677
Alju05g0626 225 CDD B3_DNA 158 225 IPR003340 GO:0003677
Alju05g0626 225 Gene3D - 108 225 IPR015300 -
Alju05g0626 225 SUPERFAMILY DNA-binding pseudobarrel domain 149 225 IPR015300 -
Alju05g0626 225 PANTHER B3 DOMAIN-CONTAINING 8 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0626 Alju-ChrAlju05 10788299 10789770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0626 12 74 B3 DNA Binding Superfamily AT4G01580 34.921 4.19e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju05g0626 B3 1.8e-11 CL0405