Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0523 ATGGGGGCAAATGAGACAACGCCGACTCACCAAGCGGAGCTTCTGAGACAAAGCGGGAAAATTCGCTTCAAGAAAGATCGTTTTGGCGCCGCAATTGACGAATATACCGGGGCAATCGCTCTGTGCGCTGACATTCCGGTTTATTATACGAATCGTGCTCTGTGTCACCTTAAGCGCAATGACTGGGTTAGAGCGGAGAAAGACTGCCGGAGAGCTATTGAACTAGACAACACGTCAGTTAAGGCTTTTGATCTTGAGAAGAGTGCCAATCCTAATGGTGATATGGTAGAGGAGATCCGGCAGGAGCTTGTAAAAGCAAAAGGCCTTGAGTTAGAAAATGCATCTGCCCAGAGATCAAGGGAATTGCAGCATTTGAAGTATGTCTCTTATGGTGGGATTATTAGGCCTAGTAATAACTTAAGAGAAGCTTGTGTGCGTGCTCTAAATGAAAAACATTCTCGTGACGTCTCTCAAATGGATATAGATAATGCTGAAGCTCAACACTTGCAACAACTTAATGCTTTAGAAAGAGTTTTCAGTGAAGCTGCAGAGGCTATCAAGGTCCCAGATTACTTATGTTGTCCAATCACTTTTGATATTCTTCGAGATCCTGTAATTACTCCATATGGGCATACATATGAGAGGGCAGCGATTCTTAAACACCTTAAAACGAGTCCGAGACAATTTGATCCAACCACACGGATTCCTCTTCATTCATCACAGCTTAAACCAAACTTGGCAATAAAGAAAGCAGTTCAGGCATTCTTGGACAAGCAAGCAATGAAATGA 789 0.4335 MGANETTPTHQAELLRQSGKIRFKKDRFGAAIDEYTGAIALCADIPVYYTNRALCHLKRNDWVRAEKDCRRAIELDNTSVKAFDLEKSANPNGDMVEEIRQELVKAKGLELENASAQRSRELQHLKYVSYGGIIRPSNNLREACVRALNEKHSRDVSQMDIDNAEAQHLQQLNALERVFSEAAEAIKVPDYLCCPITFDILRDPVITPYGHTYERAAILKHLKTSPRQFDPTTRIPLHSSQLKPNLAIKKAVQAFLDKQAMK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0523 262 SMART Ubox_2 191 255 IPR003613 GO:0004842|GO:0016567
Alju05g0523 262 SUPERFAMILY TPR-like 11 114 IPR011990 GO:0005515
Alju05g0523 262 Gene3D Tetratricopeptide repeat domain 3 128 IPR011990 GO:0005515
Alju05g0523 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 262 IPR013083 -
Alju05g0523 262 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 7 82 IPR045200 GO:0000209|GO:0061630
Alju05g0523 262 Pfam U-box domain 188 259 IPR003613 GO:0004842|GO:0016567
Alju05g0523 262 CDD RING-Ubox_CHIP 188 258 IPR045202 -
Alju05g0523 262 ProSiteProfiles U-box domain profile. 187 262 IPR003613 GO:0004842|GO:0016567
Alju05g0523 262 SMART tpr_5 12 45 IPR019734 GO:0005515
Alju05g0523 262 SMART tpr_5 46 79 IPR019734 GO:0005515
Alju05g0523 262 SUPERFAMILY RING/U-box 182 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0523 Alju-ChrAlju05 8984158 8987806 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0523 12 259 U-box Gene Family AT3G07370 48.736 1.93e-78 236